Stable antibiotic resistance and rapid human adaptation in livestock-associated MRSA von Matuszewska, Marta, Murray, Gemma G R, Ba, Xiaoliang, Wood, Rhiannon, Holmes, Mark A, Weinert, Lucy A

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The Evolutionary Genomics of Host Specificity in Staphylococcus aureus von Matuszewska, Marta, Murray, Gemma G.R., Harrison, Ewan M., Holmes, Mark A., Weinert, Lucy A.

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Zooming into the structure of the microbiome von Murray, Gemma G. R., Chaguza, Chrispin

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Genome Reduction Is Associated with Bacterial Pathogenicity across Different Scales of Temporal and Ecological Divergence von Murray, Gemma G R, Charlesworth, Jane, Miller, Eric L, Casey, Michael J, Lloyd, Catrin T, Gottschalk, Marcelo, Tucker, Alexander W (Dan), Welch, John J, Weinert, Lucy A

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Mutation rate dynamics reflect ecological change in an emerging zoonotic pathogen von Murray, Gemma G R, Balmer, Andrew J, Herbert, Josephine, Hadjirin, Nazreen F, Kemp, Caroline L, Matuszewska, Marta, Bruchmann, Sebastian, Hossain, A S Md Mukarram, Gottschalk, Marcelo, Tucker, Alexander W, Miller, Eric, Weinert, Lucy A

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Mutational spectra are associated with bacterial niche von Ruis, Christopher, Weimann, Aaron, Tonkin-Hill, Gerry, Pandurangan, Arun Prasad, Matuszewska, Marta, Murray, Gemma G. R., Lévesque, Roger C., Blundell, Tom L., Floto, R. Andres, Parkhill, Julian

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Natural selection shaped the rise and fall of passenger pigeon genomic diversity von Murray, Gemma G. R., Soares, André E. R., Novak, Ben J., Schaefer, Nathan K., Cahill, James A., Baker, Allan J., Demboski, John R., Doll, Andrew, Da Fonseca, Rute R., Fulton, Tara L., Gilbert, M. Thomas P., Heintzman, Peter D., Letts, Brandon, McIntosh, George, O’Connell, Brendan L., Peck, Mark, Pipes, Marie-Lorraine, Rice, Edward S., Santos, Kathryn M., Sohrweide, A. Gregory, Vohr, Samuel H., Corbett-Detig, Russell B., Green, Richard E., Shapiro, Beth

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The effect of genetic structure on molecular dating and tests for temporal signal von Murray, Gemma G. R., Wang, Fang, Harrison, Ewan M., Paterson, Gavin K., Mather, Alison E., Harris, Simon R., Holmes, Mark A., Rambaut, Andrew, Welch, John J., Gilbert, M.

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Large-scale genomic analysis of antimicrobial resistance in the zoonotic pathogen Streptococcus suis von Hadjirin, Nazreen F, Miller, Eric L, Murray, Gemma G R, Yen, Phung L K, Phuc, Ho D, Wileman, Thomas M, Hernandez-Garcia, Juan, Williamson, Susanna M, Parkhill, Julian, Maskell, Duncan J, Zhou, Rui, Fittipaldi, Nahuel, Gottschalk, Marcelo, Tucker, A W Dan, Hoa, Ngo Thi, Welch, John J, Weinert, Lucy A

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Prevalence, antimicrobial resistance and genomic comparison of non-typhoidal salmonella isolated from pig farms with different levels of intensification in Yangon Region, Myanmar von Trung, Nguyen Vinh, Zaw Moe, Aung, May Than, Hlaing, Bich Chieu, Tran Thi, Mukarram Hossain, A S Md, Trung Thanh, Nguyen, Yen, Huynh Xuan, Yen, Phung Le Kim, Nghia, Nguyen Huu, Murray, Gemma G R, Su Wai, Thiri, Thein Maw, Min, Myint, Hnin Thidar, Win, Ye Tun, Wood, James, Thwaites, Guy, Maskell, Duncan J, Tucker, Alexander W, Hoa, Ngo Thi

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The Phylogeny of Rickettsia Using Different Evolutionary Signatures: How Tree-Like is Bacterial Evolution? von Murray, Gemma G. R., Weinert, Lucy A., Rhule, Emma L., Welch, John J.

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A polar bear paleogenome reveals extensive ancient gene flow from polar bears into brown bears von Wang, Ming-Shan, Murray, Gemma G. R., Mann, Daniel, Groves, Pamela, Vershinina, Alisa O., Supple, Megan A., Kapp, Joshua D., Corbett-Detig, Russell, Crump, Sarah E., Stirling, Ian, Laidre, Kristin L., Kunz, Michael, Dalén, Love, Green, Richard E., Shapiro, Beth

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Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission von Paterson, Gavin K., Harrison, Ewan M., Murray, Gemma G. R., Welch, John J., Warland, James H., Holden, Matthew T. G., Morgan, Fiona J. E., Ba, Xiaoliang, Koop, Gerrit, Harris, Simon R., Maskell, Duncan J., Peacock, Sharon J., Herrtage, Michael E., Parkhill, Julian, Holmes, Mark A.

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Suppressors of RNAi from plant viruses are subject to episodic positive selection von Murray, Gemma G. R., Kosakovsky Pond, Sergei L., Obbard, Darren J.

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The emergence and diversification of a zoonotic pathogen from within the microbiota of intensively farmed pigs von Murray, Gemma G R, Hossain, A S Md Mukarram, Miller, Eric L, Bruchmann, Sebastian, Balmer, Andrew J, Matuszewska, Marta, Herbert, Josephine, Hadjirin, Nazreen F, Mugabi, Robert, Li, Ganwu, Ferrando, Maria Laura, Fernandes de Oliveira, Isabela Maria, Nguyen, Thanh, Yen, Phung L K, Phuc, Ho D, Zaw Moe, Aung, Su Wai, Thiri, Gottschalk, Marcelo, Aragon, Virginia, Valentin-Weigand, Peter, Heegaard, Peter M H, Vrieling, Manouk, Thein Maw, Min, Thidar Myint, Hnin, Tun Win, Ye, Thi Hoa, Ngo, Bentley, Stephen D, Clavijo, Maria J, Wells, Jerry M, Tucker, Alexander W, Weinert, Lucy A

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A detailed life history of a pleistocene steppe bison (Bison priscus) skeleton unearthed in Arctic Alaska von Funck, Juliette, Heintzman, Peter D., Murray, Gemma G.R., Shapiro, Beth, McKinney, Holly, Huchet, Jean-Bernard, Bigelow, Nancy, Druckenmiller, Patrick, Wooller, Matthew J.

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Variation in bacterial pathotype is consistent with the sit-and-wait hypothesis von Rayner, Eliza, Lavenir, Amelie, Murray, Gemma G R, Matusewska, Marta, Tucker, Alexander W, Welch, John J, Weinert, Lucy A

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The evolution, diversity, and host associations of rhabdoviruses von Longdon, Ben, Murray, Gemma G. R., Palmer, William J., Day, Jonathan P., Parker, Darren J, Welch, John J., Obbard, Darren J., Jiggins, Francis M.

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Inference of natural selection from ancient DNA von Dehasque, Marianne, Ávila‐Arcos, María C., Díez‐del‐Molino, David, Fumagalli, Matteo, Guschanski, Katerina, Lorenzen, Eline D., Malaspinas, Anna‐Sapfo, Marques‐Bonet, Tomas, Martin, Michael D., Murray, Gemma G. R., Papadopulos, Alexander S. T., Therkildsen, Nina Overgaard, Wegmann, Daniel, Dalén, Love, Foote, Andrew D.

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Genetic susceptibility to infectious disease in East African Shorthorn Zebu: a genome-wide analysis of the effect of heterozygosity and exotic introgression von Murray, Gemma G R, Woolhouse, Mark E J, Tapio, Miika, Mbole-Kariuki, Mary N, Sonstegard, Tad S, Thumbi, Samuel M, Jennings, Amy E, van Wyk, Ilana Conradie, Chase-Topping, Margo, Kiara, Henry, Toye, Phil, Coetzer, Koos, deC Bronsvoort, Barend M, Hanotte, Olivier

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