Protein-Protein Interactions: Methods and Protocols von Mukhtar, Shahid

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Network biology discovers pathogen contact points in host protein-protein interactomes von Ahmed, Hadia, Howton, T. C., Sun, Yali, Weinberger, Natascha, Belkhadir, Youssef, Mukhtar, M. Shahid

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Inference of Gene Regulatory Network from Single-Cell Transcriptomic Data Using pySCENIC von Kumar, Nilesh, Mishra, Bharat, Athar, Mohammad, Mukhtar, Shahid

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Ranking Plant Network Nodes Based on Their Centrality Measures von Kumar, Nilesh, Mukhtar, M Shahid

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Pathogen Tactics to Manipulate Plant Cell Death von Mukhtar, M. Shahid, McCormack, Maggie E., Argueso, Cristiana T., Pajerowska-Mukhtar, Karolina M.

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WRKY70 transcription factor of Arabidopsis influences both the plant senescence and defense signaling pathways von Ülker, Bekir, Shahid Mukhtar, M, Somssich, Imre E

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Molecular pathology associated with altered synaptic transcriptome in the dorsolateral prefrontal cortex of depressed subjects von Yoshino, Yuta, Roy, Bhaskar, Kumar, Nilesh, Shahid Mukhtar, M., Dwivedi, Yogesh

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Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network von Mukhtar, M. Shahid, Carvunis, Anne-Ruxandra, Dreze, Matija, Epple, Petra, Steinbrenner, Jens, Moore, Jonathan, Tasan, Murat, Galli, Mary, Hao, Tong, Nishimura, Marc T., Pevzner, Samuel J., Donovan, Susan E., Ghamsari, Lila, Santhanam, Balaji, Romero, Viviana, Poulin, Matthew M., Gebreab, Fana, Gutierrez, Bryan J., Tam, Stanley, Monachello, Dario, Boxem, Mike, Harbort, Christopher J., McDonald, Nathan, Gai, Lantian, Chen, Huaming, He, Yijian, Vandenhaute, Jean, Roth, Frederick P., Hill, David E., Ecker, Joseph R., Vidal, Marc, Beynon, Jim, Braun, Pascal, Dang, Jeffery L.

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Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates von Baltrus, David A, Nishimura, Marc T, Romanchuk, Artur, Chang, Jeff H, Mukhtar, M Shahid, Cherkis, Karen, Roach, Jeff, Grant, Sarah R, Jones, Corbin D, Dangl, Jeffery L

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Modeling Transcriptional Regulation: Methods and Protocols von MUKHTAR, SHAHID

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Duckweed: Beyond an Efficient Plant Model System von Thingujam, Doni, Pajerowska-Mukhtar, Karolina M, Mukhtar, M Shahid

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Transcriptional circuitry atlas of genetic diverse unstimulated murine and human macrophages define disparity in population-wide innate immunity von Mishra, Bharat, Athar, Mohammad, Mukhtar, M. Shahid

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Transcriptomics reveals multiple resistance mechanisms against cotton leaf curl disease in a naturally immune cotton species, Gossypium arboreum von Naqvi, Rubab Zahra, Zaidi, Syed Shan-e-Ali, Akhtar, Khalid Pervaiz, Strickler, Susan, Woldemariam, Melkamu, Mishra, Bharat, Mukhtar, M. Shahid, Scheffler, Brian E., Scheffler, Jodi A., Jander, Georg, Mueller, Lukas A., Asif, Muhammad, Mansoor, Shahid

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Convergent Targeting of a Common Host Protein-Network by Pathogen Effectors from Three Kingdoms of Life von Weßling, Ralf, Epple, Petra, Altmann, Stefan, He, Yijian, Yang, Li, Henz, Stefan R., McDonald, Nathan, Wiley, Kristin, Bader, Kai Christian, Gläßer, Christine, Mukhtar, M. Shahid, Haigis, Sabine, Ghamsari, Lila, Stephens, Amber E., Ecker, Joseph R., Vidal, Marc, Jones, Jonathan D.G., Mayer, Klaus F.X., Ver Loren van Themaat, Emiel, Weigel, Detlef, Schulze-Lefert, Paul, Dangl, Jeffery L., Panstruga, Ralph, Braun, Pascal

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The Roles of Aquaporins in Plant Stress Responses von Afzal, Zunaira, Howton, T C, Sun, Yali, Mukhtar, M Shahid

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An extracellular network of Arabidopsis leucine-rich repeat receptor kinases von Smakowska-Luzan, Elwira, Mott, G. Adam, Parys, Katarzyna, Stegmann, Martin, Howton, Timothy C, Layeghifard, Mehdi, Neuhold, Jana, Lehner, Anita, Kong, Jixiang, Grünwald, Karin, Weinberger, Natascha, Satbhai, Santosh B., Mayer, Dominik, Busch, Wolfgang, Madalinski, Mathias, Stolt-Bergner, Peggy, Provart, Nicholas J., Mukhtar, M. Shahid, Zipfel, Cyril, Desveaux, Darrell, Guttman, David S., Belkhadir, Youssef

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Transcriptomic analysis of cultivated cotton Gossypium hirsutum provides insights into host responses upon whitefly-mediated transmission of cotton leaf curl disease von Naqvi, Rubab Zahra, Zaidi, Syed Shan-E-Ali, Mukhtar, M Shahid, Amin, Imran, Mishra, Bharat, Strickler, Susan, Mueller, Lukas A, Asif, Muhammad, Mansoor, Shahid

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A rice protein interaction network reveals high centrality nodes and candidate pathogen effector targets von Mishra, Bharat, Kumar, Nilesh, Shahid Mukhtar, M.

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Global temporal dynamic landscape of pathogen-mediated subversion of Arabidopsis innate immunity von Mishra, Bharat, Sun, Yali, Ahmed, Hadia, Liu, Xiaoyu, Mukhtar, M. Shahid

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Top 10 oomycete pathogens in molecular plant pathology von Kamoun, Sophien, Furzer, Oliver, Jones, Jonathan D. G, Judelson, Howard S, Ali, Gul Shad, Dalio, Ronaldo J. D, Roy, Sanjoy Guha, Schena, Leonardo, Zambounis, Antonios, Panabières, Franck, Cahill, David, Ruocco, Michelina, Figueiredo, Andreia, Chen, Xiao‐Ren, Hulvey, Jon, Stam, Remco, Lamour, Kurt, Gijzen, Mark, Tyler, Brett M, Grünwald, Niklaus J, Mukhtar, M. Shahid, Tomé, Daniel F. A, Tör, Mahmut, Van Den Ackerveken, Guido, McDowell, John, Daayf, Fouad, Fry, William E, Lindqvist‐Kreuze, Hannele, Meijer, Harold J. G, Petre, Benjamin, Ristaino, Jean, Yoshida, Kentaro, Birch, Paul R. J, Govers, Francine

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