Genome-wide association genetics of an adaptive trait in lodgepole pine von PARCHMAN, THOMAS L., GOMPERT, ZACHARIAH, MUDGE, JOANN, SCHILKEY, FAYE D., BENKMAN, CRAIG W., BUERKLE, C. ALEX

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Genome and evolution of the arbuscular mycorrhizal fungus Diversispora epigaea (formerly Glomus versiforme) and its bacterial endosymbionts von Sun, Xuepeng, Chen, Wenbo, Ivanov, Sergey, MacLean, Allyson M., Wight, Haley, Ramaraj, Thiruvarangan, Mudge, Joann, J. Harrison, Maria, Fei, Zhangjun

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High-resolution crossover mapping reveals similarities and differences of male and female recombination in maize von Kianian, Penny M. A., Wang, Minghui, Simons, Kristin, Ghavami, Farhad, He, Yan, Dukowic-Schulze, Stefanie, Sundararajan, Anitha, Sun, Qi, Pillardy, Jaroslaw, Mudge, Joann, Chen, Changbin, Kianian, Shahryar F., Pawlowski, Wojciech P.

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Dynamic Extreme Aneuploidy (DEA) in the vegetable pathogen Phytophthora capsici and the potential for rapid asexual evolution von Hu, Jian, Shrestha, Sandesh, Zhou, Yuxin, Mudge, Joann, Liu, Xili, Lamour, Kurt

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Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula von Branca, Antoine, Paape, Timothy D, Zhou, Peng, Briskine, Roman, Farmer, Andrew D, Mudge, Joann, Bharti, Arvind K, Woodward, Jimmy E, May, Gregory D, Gentzbittel, Laurent, Ben, Cécile, Denny, Roxanne, Sadowsky, Michael J, Ronfort, Joëlle, Bataillon, Thomas, Young, Nevin D, Tiffin, Peter

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Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes von Zhou, Peng, Silverstein, Kevin A T, Ramaraj, Thiruvarangan, Guhlin, Joseph, Denny, Roxanne, Liu, Junqi, Farmer, Andrew D, Steele, Kelly P, Stupar, Robert M, Miller, Jason R, Tiffin, Peter, Mudge, Joann, Young, Nevin D

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Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes von Suh, Alexander, Witt, Christopher C., Menger, Juliana, Sadanandan, Keren R., Podsiadlowski, Lars, Gerth, Michael, Weigert, Anne, McGuire, Jimmy A., Mudge, Joann, Edwards, Scott V., Rheindt, Frank E.

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Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes von Chen, Changbin, Farmer, Andrew D, Langley, Raymond J, Mudge, Joann, Crow, John A, May, Gregory D, Huntley, James, Smith, Alan G, Retzel, Ernest F

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C6/36 Aedes albopictus cells have a dysfunctional antiviral RNA interference response von Brackney, Doug E, Scott, Jaclyn C, Sagawa, Fumihiko, Woodward, Jimmy E, Miller, Neil A, Schilkey, Faye D, Mudge, Joann, Wilusz, Jeffrey, Olson, Ken E, Blair, Carol D, Ebel, Gregory D

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Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula von Stanton-Geddes, John, Paape, Timothy, Epstein, Brendan, Briskine, Roman, Yoder, Jeremy, Mudge, Joann, Bharti, Arvind K, Farmer, Andrew D, Zhou, Peng, Denny, Roxanne, May, Gregory D, Erlandson, Stephanie, Yakub, Mohammed, Sugawara, Masayuki, Sadowsky, Michael J, Young, Nevin D, Tiffin, Peter

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Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies von Sugawara, Masayuki, Epstein, Brendan, Badgley, Brian D, Unno, Tatsuya, Xu, Lei, Reese, Jennifer, Gyaneshwar, Prasad, Denny, Roxanne, Mudge, Joann, Bharti, Arvind K, Farmer, Andrew D, May, Gregory D, Woodward, Jimmy E, Médigue, Claudine, Vallenet, David, Lajus, Aurélie, Rouy, Zoé, Martinez-Vaz, Betsy, Tiffin, Peter, Young, Nevin D, Sadowsky, Michael J

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Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data von Chopra, Ratan, Burow, Gloria, Farmer, Andrew, Mudge, Joann, Simpson, Charles E, Burow, Mark D

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Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula von Moll, Karen M, Zhou, Peng, Ramaraj, Thiruvarangan, Fajardo, Diego, Devitt, Nicholas P, Sadowsky, Michael J, Stupar, Robert M, Tiffin, Peter, Miller, Jason R, Young, Nevin D, Silverstein, Kevin A T, Mudge, Joann

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Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis von Dukowic-Schulze, Stefanie, Sundararajan, Anitha, Ramaraj, Thiruvarangan, Kianian, Shahryar, Pawlowski, Wojciech P, Mudge, Joann, Chen, Changbin

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Hybrid assembly with long and short reads improves discovery of gene family expansions von Miller, Jason R, Zhou, Peng, Mudge, Joann, Gurtowski, James, Lee, Hayan, Ramaraj, Thiruvarangan, Walenz, Brian P, Liu, Junqi, Stupar, Robert M, Denny, Roxanne, Song, Li, Singh, Namrata, Maron, Lyza G, McCouch, Susan R, McCombie, W Richard, Schatz, Michael C, Tiffin, Peter, Young, Nevin D, Silverstein, Kevin A T

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High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches von Bonhomme, Maxime, André, Olivier, Badis, Yacine, Ronfort, Joëlle, Burgarella, Concetta, Chantret, Nathalie, Prosperi, Jean‐Marie, Briskine, Roman, Mudge, Joann, Debéllé, Frédéric, Navier, Hélène, Miteul, Henri, Hajri, Ahmed, Baranger, Alain, Tiffin, Peter, Dumas, Bernard, Pilet‐Nayel, Marie‐Laure, Young, Nevin D., Jacquet, Christophe

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Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes von Cannon, S.B, Sterck, L, Rombauts, S, Sato, S, Cheung, F, Gouzy, J, Wang, X, Mudge, J, Vasdewani, J, Schiex, T

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Population genomics of the facultatively mutualistic bacteria Sinorhizobium meliloti and S. medicae von Epstein, Brendan, Branca, Antoine, Mudge, Joann, Bharti, Arvind K, Briskine, Roman, Farmer, Andrew D, Sugawara, Masayuki, Young, Nevin D, Sadowsky, Michael J, Tiffin, Peter

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Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens von Deschamps, Stéphane, Mudge, Joann, Cameron, Connor, Ramaraj, Thiruvarangan, Anand, Ajith, Fengler, Kevin, Hayes, Kevin, Llaca, Victor, Jones, Todd J., May, Gregory

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Corrigendum: Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis von Dukowic-Schulze, Stefanie, Sundararajan, Anitha, Ramaraj, Thiruvarangan, Kianian, Shahryar, Pawlowski, Wojciech P., Mudge, Joann, Chen, Changbin

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