New tools for the analysis and validation of cryo‐EM maps and atomic models von Afonine, Pavel V., Klaholz, Bruno P., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D., Urzhumtsev, Alexandre

Volltext

Polder maps: improving OMIT maps by excluding bulk solvent von Liebschner, Dorothee, Afonine, Pavel V., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D.

Volltext

MolProbity: More and better reference data for improved all‐atom structure validation von Williams, Christopher J., Headd, Jeffrey J., Moriarty, Nigel W., Prisant, Michael G., Videau, Lizbeth L., Deis, Lindsay N., Verma, Vishal, Keedy, Daniel A., Hintze, Bradley J., Chen, Vincent B., Jain, Swati, Lewis, Steven M., Arendall, W. Bryan, Snoeyink, Jack, Adams, Paul D., Lovell, Simon C., Richardson, Jane S., Richardson, David C.

Volltext

electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation von Moriarty, Nigel W., Grosse-Kunstleve, Ralf W., Adams, Paul D.

Volltext

FEM: feature-enhanced map von Afonine, Pavel V., Moriarty, Nigel W., Mustyakimov, Marat, Sobolev, Oleg V., Terwilliger, Thomas C., Turk, Dusan, Urzhumtsev, Alexandre, Adams, Paul D.

Volltext

PHENIX: a comprehensive Python-based system for macromolecular structure solution von Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Davis, Ian W., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Kapral, Gary J., Grosse-Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert, Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.

Volltext

The Phenix software for automated determination of macromolecular structures von Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Jain, Swati, Kapral, Gary J., Grosse Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert D., Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.

Volltext

Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex at 2.5 Å von Qian, Pu, Croll, Tristan I, Swainsbury, David J K, Castro-Hartmann, Pablo, Moriarty, Nigel W, Sader, Kasim, Hunter, C Neil

Volltext

Cryo_fit: Democratization of flexible fitting for cryo-EM von Kim, Doo Nam, Moriarty, Nigel W., Kirmizialtin, Serdal, Afonine, Pavel V., Poon, Billy, Sobolev, Oleg V., Adams, Paul D., Sanbonmatsu, Karissa

Volltext

PHENIX: building new software for automated crystallographic structure determination von Adams, Paul D., Grosse-Kunstleve, Ralf W., Hung, Li-Wei, Ioerger, Thomas R., McCoy, Airlie J., Moriarty, Nigel W., Read, Randy J., Sacchettini, James C., Sauter, Nicholas K., Terwilliger, Thomas C.

Volltext

Interactive comparison and remediation of collections of macromolecular structures von Moriarty, Nigel W., Liebschner, Dorothee, Klei, Herbert E., Echols, Nathaniel, Afonine, Pavel V., Headd, Jeffrey J., Poon, Billy K., Adams, Paul D.

Volltext

REPLY TO WANG ET AL: Clear evidence of binding of Ox to the oxygen-evolving complex of photosystem II is best observed in the omit map von Ibrahim, Mohamed, Moriarty, Nigel W., Kern, Jan, Holton, James M., Brewster, Aaron S., Bhowmick, Asmit, Bergmann, Uwe, Zouni, Athina, Messinger, Johannes, Yachandra, Vittal K., Yano, Junko, Dobbek, Holger, Sauter, Nicholas K., Adams, Paul D.

Volltext

phenix.model_vs_data: a high-level tool for the calculation of crystallographic model and data statistics von Afonine, Pavel V., Grosse-Kunstleve, Ralf W., Chen, Vincent B., Headd, Jeffrey J., Moriarty, Nigel W., Richardson, Jane S., Richardson, David C., Urzhumtsev, Alexandre, Zwart, Peter H., Adams, Paul D.

Volltext

A Global Ramachandran Score Identifies Protein Structures with Unlikely Stereochemistry von Sobolev, Oleg V., Afonine, Pavel V., Moriarty, Nigel W., Hekkelman, Maarten L., Joosten, Robbie P., Perrakis, Anastassis, Adams, Paul D.

Volltext

Towards automated crystallographic structure refinement with phenix.refine von Afonine, Pavel V., Grosse-Kunstleve, Ralf W., Echols, Nathaniel, Headd, Jeffrey J., Moriarty, Nigel W., Mustyakimov, Marat, Terwilliger, Thomas C., Urzhumtsev, Alexandre, Zwart, Peter H., Adams, Paul D.

Volltext

A radical approach to radicals von Liu, Youjia, Biczysko, Malgorzata, Moriarty, Nigel W.

Volltext

Automating crystallographic structure solution and refinement of protein-ligand complexes von Echols, Nathaniel, Moriarty, Nigel W., Klei, Herbert E., Afonine, Pavel V., Bunkóczi, Gábor, Headd, Jeffrey J., McCoy, Airlie J., Oeffner, Robert D., Read, Randy J., Terwilliger, Thomas C., Adams, Paul D.

Volltext

Protonation of histidine rings using quantum‐mechanical methods von Moriarty, Nigel W., Moussa, Jonathan, Adams, Paul D.

Volltext

Macromolecular structure determination using X‐rays, neutrons and electrons: recent developments in Phenix von Liebschner, Dorothee, Afonine, Pavel V., Baker, Matthew L., Bunkóczi, Gábor, Chen, Vincent B., Croll, Tristan I., Hintze, Bradley, Hung, Li-Wei, Jain, Swati, McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert D., Poon, Billy K., Prisant, Michael G., Read, Randy J., Richardson, Jane S., Richardson, David C., Sammito, Massimo D., Sobolev, Oleg V., Stockwell, Duncan H., Terwilliger, Thomas C., Urzhumtsev, Alexandre G., Videau, Lizbeth L., Williams, Christopher J., Adams, Paul D.

Volltext

Structures of the intermediates of Kok’s photosynthetic water oxidation clock von Kern, Jan, Chatterjee, Ruchira, Young, Iris D., Fuller, Franklin D., Lassalle, Louise, Ibrahim, Mohamed, Gul, Sheraz, Fransson, Thomas, Brewster, Aaron S., Alonso-Mori, Roberto, Hussein, Rana, Zhang, Miao, Douthit, Lacey, de Lichtenberg, Casper, Cheah, Mun Hon, Shevela, Dmitry, Wersig, Julia, Seuffert, Ina, Sokaras, Dimosthenis, Pastor, Ernest, Weninger, Clemens, Kroll, Thomas, Sierra, Raymond G., Aller, Pierre, Butryn, Agata, Orville, Allen M., Liang, Mengning, Batyuk, Alexander, Koglin, Jason E., Carbajo, Sergio, Boutet, Sébastien, Moriarty, Nigel W., Holton, James M., Dobbek, Holger, Adams, Paul D., Bergmann, Uwe, Sauter, Nicholas K., Zouni, Athina, Messinger, Johannes, Yano, Junko, Yachandra, Vittal K.

Volltext