DiCleave: a deep learning model for predicting human Dicer cleavage sites von Mu, Lixuan, Song, Jiangning, Akutsu, Tatsuya, Mori, Tomoya

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Alignment of single-cell trajectory trees with CAPITAL von Sugihara, Reiichi, Kato, Yuki, Mori, Tomoya, Kawahara, Yukio

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Common power laws for cities and spatial fractal structures von Mori, Tomoya, Smith, Tony E., Hsu, Wen-Tai

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Evolution of the Size and Industrial Structure of Cities in Japan between 1980 and 2010: Constant Churning and Persistent Regularity von Mori, Tomoya

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Identification of periodic attractors in Boolean networks using a priori information von Münzner, Ulrike, Mori, Tomoya, Krantz, Marcus, Klipp, Edda, Akutsu, Tatsuya

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Increasing returns in transportation and the formation of hubs von Mori, Tomoya

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Comparison of Pseudoknotted RNA Secondary Structures by Topological Centroid Identification and Tree Edit Distance von Wang, Feiqi, Akutsu, Tatsuya, Mori, Tomoya

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Novel computational model of gastrula morphogenesis to identify spatial discriminator genes by self-organizing map (SOM) clustering von Mori, Tomoya, Takaoka, Haruka, Yamane, Junko, Alev, Cantas, Fujibuchi, Wataru

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On the spatial scale of industrial agglomerations von Mori, Tomoya, Smith, Tony E.

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Analysis of Carcinogenic Involvement of MicroRNA Pattern in Peripheral Non-Cancerous Tissues and Chronic Viral Liver Injury von Umezu, Tomohiro, Mori, Tomoya, Toyoda, Hidenori, Kanekura, Kohsuke, Tamori, Akihiro, Ochiya, Takahiro, Kuroda, Masahiko, Akutsu, Tatsuya, Murakami, Yoshiki

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Crystal structural analysis of aldoxime dehydratase from Bacillus sp. OxB-1: Importance of surface residues in optimization for crystallization von Matsui, Daisuke, Muraki, Norifumi, Chen, Ke, Mori, Tomoya, Ingram, Aaron A., Oike, Keiko, Gröger, Harald, Aono, Shigetoshi, Asano, Yasuhisa

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Attractor detection and enumeration algorithms for Boolean networks von Mori, Tomoya, Akutsu, Tatsuya

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Optical and electrical characteristics of carbonized film prepared from coal tar pitch under a high magnetic field of 10 T von Hamasaki, Atom, Fujio, Kazuki, Mori, Tomoya, Iide, Masashi, Takeuchi, Yuka, Katsuki, Akio, Ozeki, Sumio

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Development of tissue factor-targeted liposomes for effective drug delivery to stroma-rich tumors von Shimizu, Kosuke, Takeuchi, Yoshihito, Otsuka, Kazuma, Mori, Tomoya, Narita, Yudai, Takasugi, Shohei, Magata, Yasuhiro, Matsumura, Yasuhiro, Oku, Naoto

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eSPRESSO: topological clustering of single-cell transcriptomics data to reveal informative genes for spatio-temporal architectures of cells von Mori, Tomoya, Takase, Toshiro, Lan, Kuan-Chun, Yamane, Junko, Alev, Cantas, Kimura, Azuma, Osafune, Kenji, Yamashita, Jun K, Akutsu, Tatsuya, Kitano, Hiroaki, Fujibuchi, Wataru

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Characterization of vacuum‐annealed TiNb2O7 as high potential anode material for lithium‐ion battery von Inada, Ryoji, Mori, Tomoya, Kumasaka, Rei, Ito, Ryuta, Tojo, Tomohiro, Sakurai, Yoji

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An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data von Kato, Yuki, Mori, Tomoya, Sato, Kengo, Maegawa, Shingo, Hosokawa, Hiroshi, Akutsu, Tatsuya

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Centrality bias in inter-city trade von Mori, Tomoya, Wrona, Jens

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Similar Subtree Search Using Extended Tree Inclusion von Mori, Tomoya, Takasu, Atsuhiro, Jansson, Jesper, Jaewook Hwang, Tamura, Takeyuki, Akutsu, Tatsuya

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Beyond urban form: How Masahisa Fujita shapes us von Berliant, Marcus, Mori, Tomoya

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