An extensive evaluation of read trimming effects on Illumina NGS data analysis von Del Fabbro, Cristian, Scalabrin, Simone, Morgante, Michele, Giorgi, Federico M

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Structural variation and genome complexity: is dispensable really dispensable? von Marroni, Fabio, Pinosio, Sara, Morgante, Michele

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The genomes of 204 Vitis vinifera accessions reveal the origin of European wine grapes von Magris, Gabriele, Jurman, Irena, Fornasiero, Alice, Paparelli, Eleonora, Schwope, Rachel, Marroni, Fabio, Di Gaspero, Gabriele, Morgante, Michele

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Three distinct mutational mechanisms acting on a single gene underpin the origin of yellow flesh in peach von Falchi, Rachele, Vendramin, Elisa, Zanon, Laura, Scalabrin, Simone, Cipriani, Guido, Verde, Ignazio, Vizzotto, Giannina, Morgante, Michele

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A unified classification system for eukaryotic transposable elements von Schulman, Alan H, Wicker, Thomas, Sabot, François, Hua-Van, Aurélie, Bennetzen, Jeffrey L, Capy, Pierre, Chalhoub, Boulos, Flavell, Andrew, Leroy, Philippe, Morgante, Michele, Panaud, Olivier, Paux, Etienne, SanMiguel, Phillip

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Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays von Dell'Acqua, Matteo, Gatti, Daniel M, Pea, Giorgio, Cattonaro, Federica, Coppens, Frederik, Magris, Gabriele, Hlaing, Aye L, Aung, Htay H, Nelissen, Hilde, Baute, Joke, Frascaroli, Elisabetta, Churchill, Gary A, Inzé, Dirk, Morgante, Michele, Pè, Mario Enrico

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Single primer enrichment technology as a tool for massive genotyping: a benchmark on black poplar and maize von Scaglione, Davide, Pinosio, Sara, Marroni, Fabio, Di Centa, Eleonora, Fornasiero, Alice, Magris, Gabriele, Scalabrin, Simone, Cattonaro, Federica, Taylor, Gail, Morgante, Michele

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A chromosome-scale assembly reveals chromosomal aberrations and exchanges generating genetic diversity in Coffea arabica germplasm von Scalabrin, Simone, Magris, Gabriele, Liva, Mario, Vitulo, Nicola, Vidotto, Michele, Scaglione, Davide, Del Terra, Lorenzo, Ruosi, Manuela Rosanna, Navarini, Luciano, Pellegrino, Gloria, Berny Mier y Teran, Jorge Carlos, Toniutti, Lucile, Suggi Liverani, Furio, Cerutti, Mario, Di Gaspero, Gabriele, Morgante, Michele

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Assembly and Annotation of Red Spruce ( Picea rubens ) Chloroplast Genome, Identification of Simple Sequence Repeats, and Phylogenetic Analysis in Picea von Parmar, Rajni, Cattonaro, Federica, Phillips, Carrie, Vassiliev, Serguei, Morgante, Michele, Rajora, Om P

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Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize von Morgante, Michele, Brunner, Stephan, Pea, Giorgio, Fengler, Kevin, Zuccolo, Andrea, Rafalski, Antoni

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Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies von Jung, Sook, Cestaro, Alessandro, Troggio, Michela, Main, Dorrie, Zheng, Ping, Cho, Ilhyung, Folta, Kevin M, Sosinski, Bryon, Abbott, Albert, Celton, Jean-Marc, Arús, Pere, Shulaev, Vladimir, Verde, Ignazio, Morgante, Michele, Rokhsar, Daniel, Velasco, Riccardo, Sargent, Daniel James

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SSR-based molecular profile of 1005 grapevine (Vitis vinifera L.) accessions uncovers new synonymy and parentages, and reveals a large admixture amongst varieties of different geog... von Cipriani, Guido, Spadotto, Alessandro, Jurman, Irena, Di Gaspero, Gabriele, Crespan, Manna, Meneghetti, Stefano, Frare, Enrica, Vignani, Rita, Cresti, Mauro, Morgante, Michele, Pezzotti, Mario, Pe, Enrico, Policriti, Alberto, Testolin, Raffaele

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Genetic Dissection of Barley Morphology and Development von Druka, Arnis, Franckowiak, Jerome, Lundqvist, Udda, Bonar, Nicola, Alexander, Jill, Houston, Kelly, Radovic, Slobodanka, Shahinnia, Fahimeh, Vendramin, Vera, Morgante, Michele, Stein, Nils, Waugh, Robbie

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Accelerating the domestication of forest trees in a changing world von Harfouche, Antoine, Meilan, Richard, Kirst, Matias, Morgante, Michele, Boerjan, Wout, Sabatti, Maurizio, Scarascia Mugnozza, Giuseppe

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Historical introgression of the downy mildew resistance gene Rpv12 from the Asian species Vitis amurensis into grapevine varieties von Venuti, Silvia, Copetti, Dario, Foria, Serena, Falginella, Luigi, Hoffmann, Sarolta, Bellin, Diana, Cindrić, Petar, Kozma, Pál, Scalabrin, Simone, Morgante, Michele, Testolin, Raffaele, Di Gaspero, Gabriele

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Expansion and subfunctionalisation of flavonoid 3',5'-hydroxylases in the grapevine lineage von Falginella, Luigi, Castellarin, Simone D, Testolin, Raffaele, Gambetta, Gregory A, Morgante, Michele, Di Gaspero, Gabriele

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Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm von Verde, Ignazio, Bassil, Nahla, Scalabrin, Simone, Gilmore, Barbara, Lawley, Cynthia T, Gasic, Ksenija, Micheletti, Diego, Rosyara, Umesh R, Cattonaro, Federica, Vendramin, Elisa, Main, Dorrie, Aramini, Valeria, Blas, Andrea L, Mockler, Todd C, Bryant, Douglas W, Wilhelm, Larry, Troggio, Michela, Sosinski, Bryon, Aranzana, Maria José, Arús, Pere, Iezzoni, Amy, Morgante, Michele, Peace, Cameron, Wu, Rongling

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Single nucleotide polymorphism (SNP) analysis reveals ancestry and genetic diversity of cultivated and wild grapevines in Croatia von Marinov, Luka, Magris, Gabriele, Di Gaspero, Gabriele, Morgante, Michele, Maletić, Edi, Bubola, Marijan, Pejić, Ivan, Zdunić, Goran

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Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome von Sanseverino, Walter, Hénaff, Elizabeth, Vives, Cristina, Pinosio, Sara, Burgos-Paz, William, Morgante, Michele, Ramos-Onsins, Sebastián E, Garcia-Mas, Jordi, Casacuberta, Josep Maria

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Transgenerational Response to Nitrogen Deprivation in Arabidopsis thaliana von Massaro, Monica, De Paoli, Emanuele, Tomasi, Nicola, Morgante, Michele, Pinton, Roberto, Zanin, Laura

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