Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry von Collins, Ben C., Hunter, Christie L., Liu, Yansheng, Schilling, Birgit, Rosenberger, George, Bader, Samuel L., Chan, Daniel W., Gibson, Bradford W., Gingras, Anne-Claude, Held, Jason M., Hirayama-Kurogi, Mio, Hou, Guixue, Krisp, Christoph, Larsen, Brett, Lin, Liang, Liu, Siqi, Molloy, Mark P., Moritz, Robert L., Ohtsuki, Sumio, Schlapbach, Ralph, Selevsek, Nathalie, Thomas, Stefani N., Tzeng, Shin-Cheng, Zhang, Hui, Aebersold, Ruedi

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Fetuin B Is a Secreted Hepatocyte Factor Linking Steatosis to Impaired Glucose Metabolism von Meex, Ruth C., Hoy, Andrew J., Morris, Alexander, Brown, Russell D., Lo, Jennifer C.Y., Burke, Melissa, Goode, Robert J.A., Kingwell, Bronwyn A., Kraakman, Michael J., Febbraio, Mark A., Greve, Jan Willem, Rensen, Sander S., Molloy, Mark P., Lancaster, Graeme I., Bruce, Clinton R., Watt, Matthew J.

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SWATH Mass Spectrometry Performance Using Extended Peptide MS/MS Assay Libraries von Wu, Jemma X., Song, Xiaomin, Pascovici, Dana, Zaw, Thiri, Care, Natasha, Krisp, Christoph, Molloy, Mark P.

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Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes von Mirzaei, Mehdi, Gupta, Veer B., Chick, Joel M., Greco, Todd M., Wu, Yunqi, Chitranshi, Nitin, Wall, Roshana Vander, Hone, Eugene, Deng, Liting, Dheer, Yogita, Abbasi, Mojdeh, Rezaeian, Mahdie, Braidy, Nady, You, Yuyi, Salekdeh, Ghasem Hosseini, Haynes, Paul A., Molloy, Mark P., Martins, Ralph, Cristea, Ileana M., Gygi, Steven P., Graham, Stuart L., Gupta, Vivek K.

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Proteomic Profiling and Biomarker Discovery in Colorectal Liver Metastases von Wong, Geoffrey Yuet Mun, Diakos, Connie, Hugh, Thomas J, Molloy, Mark P

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Proteome analysis reveals antiangiogenic environments in chronic wounds of diabetes mellitus type 2 patients von Krisp, Christoph, Jacobsen, Frank, McKay, Matthew J., Molloy, Mark P., Steinstraesser, Lars, Wolters, Dirk A.

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High-abundance protein depletion: Comparison of methods for human plasma biomarker discovery von Polaskova, Veronika, Kapur, Amit, Khan, Alamgir, Molloy, Mark P, Baker, Mark S

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Proteome of Staphylococcus aureus Biofilm Changes Significantly with Aging von Rahman, Md Arifur, Amirkhani, Ardeshir, Chowdhury, Durdana, Mempin, Maria, Molloy, Mark P, Deva, Anand Kumar, Vickery, Karen, Hu, Honghua

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The prognostic role of inflammatory markers in patients with metastatic colorectal cancer treated with bevacizumab: A translational study [ASCENT] von Clarke, Stephen John, Burge, Matthew, Feeney, Kynan, Gibbs, Peter, Jones, Kristian, Marx, Gavin, Molloy, Mark P, Price, Timothy, Reece, William H H, Segelov, Eva, Tebbutt, Niall C

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ALS/FTD-causing mutation in cyclin F causes the dysregulation of SFPQ von Rayner, Stephanie L, Cheng, Flora, Hogan, Alison L, Grima, Natalie, Yang, Shu, Ke, Yazi D, Au, Carol G, Morsch, Marco, De Luca, Alana, Davidson, Jennilee M, Molloy, Mark P, Shi, Bingyang, Ittner, Lars M, Blair, Ian, Chung, Roger S, Lee, Albert

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How specific is my SRM?: The issue of precursor and product ion redundancy von Sherman, Jamie, McKay, Matthew J, Ashman, Keith, Molloy, Mark P

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Evaluating bioanalytical capabilities of paper spray ionization for abiraterone drug quantification in patient plasma von Bhatnagar, Atul, McKay, Matthew J., Arasaratnam, Malmaruha, Crumbaker, Megan, Gurney, Howard, Molloy, Mark P.

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Alternative assembly of respiratory complex II connects energy stress to metabolic checkpoints von Bezawork-Geleta, Ayenachew, Wen, He, Dong, LanFeng, Yan, Bing, Vider, Jelena, Boukalova, Stepana, Krobova, Linda, Vanova, Katerina, Zobalova, Renata, Sobol, Margarita, Hozak, Pavel, Novais, Silvia Magalhaes, Caisova, Veronika, Abaffy, Pavel, Naraine, Ravindra, Pang, Ying, Zaw, Thiri, Zhang, Ping, Sindelka, Radek, Kubista, Mikael, Zuryn, Steven, Molloy, Mark P., Berridge, Michael V., Pacak, Karel, Rohlena, Jakub, Park, Sunghyouk, Neuzil, Jiri

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One Step Forward with Dry Surface Biofilm (DSB) of Staphylococcus aureus : TMT-Based Quantitative Proteomic Analysis Reveals Proteomic Shifts between DSB and Hydrated Biofilm von Rahman, Md Arifur, Amirkhani, Ardeshir, Parvin, Farhana, Chowdhury, Durdana, Molloy, Mark P, Deva, Anand Kumar, Vickery, Karen, Hu, Honghua

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Pathogenic mutation in the ALS/FTD gene, CCNF, causes elevated Lys48-linked ubiquitylation and defective autophagy von Lee, Albert, Rayner, Stephanie L., Gwee, Serene S. L., De Luca, Alana, Shahheydari, Hamideh, Sundaramoorthy, Vinod, Ragagnin, Audrey, Morsch, Marco, Radford, Rowan, Galper, Jasmin, Freckleton, Sarah, Shi, Bingyang, Walker, Adam K., Don, Emily K., Cole, Nicholas J., Yang, Shu, Williams, Kelly L., Yerbury, Justin J., Blair, Ian P., Atkin, Julie D., Molloy, Mark P., Chung, Roger S.

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Proteome profiling of Pseudomonas aeruginosa PAO1 identifies novel responders to copper stress von Wright, Bradley W, Kamath, Karthik S, Krisp, Christoph, Molloy, Mark P

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ELF5 modulates the estrogen receptor cistrome in breast cancer von Piggin, Catherine L, Roden, Daniel L, Law, Andrew M K, Molloy, Mark P, Krisp, Christoph, Swarbrick, Alexander, Naylor, Matthew J, Kalyuga, Maria, Kaplan, Warren, Oakes, Samantha R, Gallego-Ortega, David, Clark, Susan J, Carroll, Jason S, Bartonicek, Nenad, Ormandy, Christopher J

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OmixLitMiner: A Bioinformatics Tool for Prioritizing Biological Leads from 'Omics Data Using Literature Retrieval and Data Mining von Steffen, Pascal, Wu, Jemma, Hariharan, Shubhang, Voss, Hannah, Raghunath, Vijay, Molloy, Mark P, Schlüter, Hartmut

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Expression of ALS/FTD-linked mutant CCNF in zebrafish leads to increased cell death in the spinal cord and an aberrant motor phenotype von Hogan, Alison L, Don, Emily K, Rayner, Stephanie L, Lee, Albert, Laird, Angela S, Watchon, Maxinne, Winnick, Claire, Tarr, Ingrid S, Morsch, Marco, Fifita, Jennifer A, Gwee, Serene S L, Formella, Isabel, Hortle, Elinor, Yuan, Kristy C, Molloy, Mark P, Williams, Kelly L, Nicholson, Garth A, Chung, Roger S, Blair, Ian P, Cole, Nicholas J

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Polyomic profiling reveals significant hepatic metabolic alterations in glucagon-receptor (GCGR) knockout mice: implications on anti-glucagon therapies for diabetes von Yang, Jianxin, MacDougall, Margit L, McDowell, Michael T, Xi, Li, Wei, Ru, Zavadoski, William J, Molloy, Mark P, Baker, John D, Kuhn, Max, Cabrera, Over, Treadway, Judith L

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