In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing von CARATTOLI, Alessandra, ZANKARI, Ea, GARCIA-FERNANDEZ, Aurora, LARSEN, Mette Voldby, LUND, Ole, VILLA, Laura, AARESTRUP, Frank Møller, HASMAN, Henrik

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Comparative Evaluation of the Antimicrobial Activity of Different Antimicrobial Peptides against a Range of Pathogenic Bacteria von Ebbensgaard, Anna, Mordhorst, Hanne, Overgaard, Michael Toft, Nielsen, Claus Gyrup, Aarestrup, Frank Møller, Hansen, Egon Bech

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MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads von Petersen, Thomas Nordahl, Lukjancenko, Oksana, Thomsen, Martin Christen Frølund, Maddalena Sperotto, Maria, Lund, Ole, Møller Aarestrup, Frank, Sicheritz-Pontén, Thomas

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Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods von Ahrenfeldt, Johanne, Skaarup, Carina, Hasman, Henrik, Pedersen, Anders Gorm, Aarestrup, Frank Møller, Lund, Ole

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PathogenFinder--distinguishing friend from foe using bacterial whole genome sequence data von Cosentino, Salvatore, Voldby Larsen, Mette, Møller Aarestrup, Frank, Lund, Ole

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Dissection of the antimicrobial and hemolytic activity of Cap18: Generation of Cap18 derivatives with enhanced specificity von Ebbensgaard, Anna, Mordhorst, Hanne, Overgaard, Michael Toft, Aarestrup, Frank Møller, Hansen, Egon Bech

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Expansion of a Plasmid Classification System for Gram-Positive Bacteria and Determination of the Diversity of Plasmids in Staphylococcus aureus Strains of Human, Animal, and Food O... von LOZANO, Carmen, GARCIA-MIGURA, Lourdes, ASPIROZ, Carmen, ZARAZAGA, Myriam, TORRES, Carmen, MOLLER AARESTRUP, Frank

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Fatal Septicemia Linked to Transmission of MRSA Clonal Complex 398 in Hospital and Nursing Home, Denmark von Nielsen, Rikke Thoft, Kemp, Michael, Holm, Anette, Skov, Marianne Nielsine, Detlefsen, Mette, Hasman, Henrik, Aarestrup, Frank Møller, Kaas, Rolf Sommer, Nielsen, Jesper Boye, Westh, Henrik, Kolmos, Hans Jørn

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Quinolone-resistant Campylobacter infections in Denmark: risk factors and clinical consequences (1) von Engberg, Jorgen, Neimann, Jakob, Nielsen, Eva Moller, Aarestrup, Frank Moller, Fussing, Vivian

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Copper Resistance in Enterococcus faecium, Mediated by the tcrB Gene, Is Selected by Supplementation of Pig Feed with Copper Sulfate von Hasman, Henrik, Kempf, Isabelle, Chidaine, Bérangère, Cariolet, Roland, Ersbøll, Annette Kjær, Houe, Hans, Bruun Hansen, Hans Christian, Aarestrup, Frank Møller

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In silico prediction of human pathogenicity in the γ-proteobacteria von Andreatta, Massimo, Nielsen, Morten, Møller Aarestrup, Frank, Lund, Ole

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A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance von Thomsen, Martin Christen Frølund, Ahrenfeldt, Johanne, Cisneros, Jose Luis Bellod, Jurtz, Vanessa, Larsen, Mette Voldby, Hasman, Henrik, Aarestrup, Frank Møller, Lund, Ole

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Consolidating and Exploring Antibiotic Resistance Gene Data Resources von Xavier, Basil Britto, Das, Anupam J, Cochrane, Guy, De Ganck, Sandra, Kumar-Singh, Samir, Aarestrup, Frank Møller, Goossens, Herman, Malhotra-Kumar, Surbhi

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Prevalence and genomic analysis of ESBL-producing Escherichia coli in retail raw meats in Singapore von Guo, Siyao, Aung, Kyaw Thu, Leekitcharoenphon, Pimlapas, Tay, Moon Y F, Seow, Kelyn L G, Zhong, Yang, Ng, Lee Ching, Aarestrup, Frank Møller, Schlundt, Joergen

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A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds von Munk, Patrick, Andersen, Vibe Dalhoff, de Knegt, Leonardo, Jensen, Marie Stengaard, Knudsen, Berith Elkær, Lukjancenko, Oksana, Mordhorst, Hanne, Clasen, Julie, Agersø, Yvonne, Folkesson, Anders, Pamp, Sünje Johanna, Vigre, Håkan, Aarestrup, Frank Møller

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Quantitative PCR versus metagenomics for monitoring antibiotic resistance genes: balancing high sensitivity and broad coverage von Ferreira, Catarina, Otani, Saria, Aarestrup, Frank Møller, Manaia, Célia M

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Routes of dispersion of antibiotic resistance genes from the poultry farm system von Scicchitano, Daniel, Babbi, Giulia, Palladino, Giorgia, Turroni, Silvia, Mekonnen, Yitagele Terefe, Laczny, Cédric, Wilmes, Paul, Leekitcharoenphon, Pimlapas, Castagnetti, Andrea, D'Amico, Federica, Brigidi, Patrizia, Savojardo, Castrense, Manfreda, Gerardo, Martelli, Pierluigi, De Cesare, Alessandra, Aarestrup, Frank Møller, Candela, Marco, Rampelli, Simone

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High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology von Nag, Sidsel, Dalgaard, Marlene D., Kofoed, Poul-Erik, Ursing, Johan, Crespo, Marina, Andersen, Lee O’Brien, Aarestrup, Frank Møller, Lund, Ole, Alifrangis, Michael

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Association between phage types and antimicrobial resistance among bovine Staphylococcus aureus from 10 countries von Vintov, Jan, Aarestrup, Frank Møller, Zinn, Christina Elsberg, Olsen, John Elmerdahl

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Decreased susceptibility to zinc chloride is associated with methicillin resistant Staphylococcus aureus CC398 in Danish swine von Aarestrup, Frank Møller, Cavaco, Lina, Hasman, Henrik

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