Composition and similarity of bovine rumen microbiota across individual animals von Jami, Elie, Mizrahi, Itzhak

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The rumen microbiome: balancing food security and environmental impacts von Mizrahi, Itzhak, Wallace, R. John, Moraïs, Sarah

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FEAST: fast expectation-maximization for microbial source tracking von Shenhav, Liat, Thompson, Mike, Joseph, Tyler A., Briscoe, Leah, Furman, Ori, Bogumil, David, Mizrahi, Itzhak, Pe’er, Itsik, Halperin, Eran

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Exploring the bovine rumen bacterial community from birth to adulthood von Jami, Elie, Israel, Adi, Kotser, Assaf, Mizrahi, Itzhak

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Context-dependent dynamics lead to the assembly of functionally distinct microbial communities von Bittleston, Leonora S., Gralka, Matti, Leventhal, Gabriel E., Mizrahi, Itzhak, Cordero, Otto X.

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Stochasticity constrained by deterministic effects of diet and age drive rumen microbiome assembly dynamics von Furman, Ori, Shenhav, Liat, Sasson, Goor, Kokou, Fotini, Honig, Hen, Jacoby, Shamay, Hertz, Tomer, Cordero, Otto X., Halperin, Eran, Mizrahi, Itzhak

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Man-made microbial resistances in built environments von Mahnert, Alexander, Moissl-Eichinger, Christine, Zojer, Markus, Bogumil, David, Mizrahi, Itzhak, Rattei, Thomas, Martinez, José Luis, Berg, Gabriele

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Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance von Wein, Tanita, Hülter, Nils F., Mizrahi, Itzhak, Dagan, Tal

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Potential role of the bovine rumen microbiome in modulating milk composition and feed efficiency von Jami, Elie, White, Bryan A, Mizrahi, Itzhak

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Antibiotic effect and microbiome persistence vary along the European seabass gut von Kokou, Fotini, Sasson, Goor, Mizrahi, Itzhak, Cnaani, Avner

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Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants von Shabat, Sheerli Kruger Ben, Sasson, Goor, Doron-Faigenboim, Adi, Durman, Thomer, Yaacoby, Shamay, Berg Miller, Margret E, White, Bryan A, Shterzer, Naama, Mizrahi, Itzhak

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Host genetic selection for cold tolerance shapes microbiome composition and modulates its response to temperature von Kokou, Fotini, Sasson, Goor, Nitzan, Tali, Doron-Faigenboim, Adi, Harpaz, Sheenan, Cnaani, Avner, Mizrahi, Itzhak

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Towards lactic acid bacteria-based biorefineries von Mazzoli, Roberto, Bosco, Francesca, Mizrahi, Itzhak, Bayer, Edward A., Pessione, Enrica

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Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities von Bickhart, Derek M., Kolmogorov, Mikhail, Tseng, Elizabeth, Portik, Daniel M., Korobeynikov, Anton, Tolstoganov, Ivan, Uritskiy, Gherman, Liachko, Ivan, Sullivan, Shawn T., Shin, Sung Bong, Zorea, Alvah, Andreu, Victòria Pascal, Panke-Buisse, Kevin, Medema, Marnix H., Mizrahi, Itzhak, Pevzner, Pavel A., Smith, Timothy P. L.

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Recycler: an algorithm for detecting plasmids from de novo assembly graphs von Rozov, Roye, Brown Kav, Aya, Bogumil, David, Shterzer, Naama, Halperin, Eran, Mizrahi, Itzhak, Shamir, Ron

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Tracking heavy water (D₂O) incorporation for identifying and sorting active microbial cells von Berry, David, Mader, Esther, Lee, Tae Kwon, Woebken, Dagmar, Wang, Yun, Zhu, Di, Palatinszky, Marton, Schintlmeister, Arno, Schmid, Markus C., Hanson, Buck T., Shterzer, Naama, Mizrahi, Itzhak, Rauch, Isabella, Decker, Thomas, Bocklitz, Thomas, Popp, Jürgen, Gibson, Christopher M., Fowler, Patrick W., Huang, Wei E., Wagner, Michael

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Protozoa populations are ecosystem engineers that shape prokaryotic community structure and function of the rumen microbial ecosystem von Solomon, Ronnie, Wein, Tanita, Levy, Bar, Eshed, Shahar, Dror, Rotem, Reiss, Veronica, Zehavi, Tamar, Furman, Ori, Mizrahi, Itzhak, Jami, Elie

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Plasmids in the human gut reveal neutral dispersal and recombination that is overpowered by inflammatory diseases von Zorea, Alvah, Pellow, David, Levin, Liron, Pilosof, Shai, Friedman, Jonathan, Shamir, Ron, Mizrahi, Itzhak

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Insights Into Culturomics of the Rumen Microbiome von Zehavi, Tamar, Probst, Maraike, Mizrahi, Itzhak

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Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future von Huws, Sharon A, Creevey, Christopher J, Oyama, Linda B, Mizrahi, Itzhak, Denman, Stuart E, Popova, Milka, Muñoz-Tamayo, Rafael, Forano, Evelyne, Waters, Sinead M, Hess, Matthias, Tapio, Ilma, Smidt, Hauke, Krizsan, Sophie J, Yáñez-Ruiz, David R, Belanche, Alejandro, Guan, Leluo, Gruninger, Robert J, McAllister, Tim A, Newbold, C Jamie, Roehe, Rainer, Dewhurst, Richard J, Snelling, Tim J, Watson, Mick, Suen, Garret, Hart, Elizabeth H, Kingston-Smith, Alison H, Scollan, Nigel D, do Prado, Rodolpho M, Pilau, Eduardo J, Mantovani, Hilario C, Attwood, Graeme T, Edwards, Joan E, McEwan, Neil R, Morrisson, Steven, Mayorga, Olga L, Elliott, Christopher, Morgavi, Diego P

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