Sparse spectral graph analysis and its application to gastric cancer drug resistance-specific molecular interplays identification von Park, Heewon, Miyano, Satoru

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Differential Gene Regulatory Network Analysis between Azacitidine-Sensitive and -Resistant Cell Lines von Park, Heewon, Miyano, Satoru

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A Simple Model-Based Approach to Inferring and Visualizing Cancer Mutation Signatures von Shiraishi, Yuichi, Tremmel, Georg, Miyano, Satoru, Stephens, Matthew

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Computational Tactics for Precision Cancer Network Biology von Park, Heewon, Miyano, Satoru

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Comprehensive information-based differential gene regulatory networks analysis (CIdrgn): Application to gastric cancer and chemotherapy-responsive gene network identification von Park, Heewon, Imoto, Seiya, Miyano, Satoru

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Structural Identifiability of Dynamic Systems Biology Models von Villaverde, Alejandro F, Barreiro, Antonio, Papachristodoulou, Antonis

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Modeling colorectal cancer evolution von Niida, Atsushi, Mimori, Koshi, Shibata, Tatsuhiro, Miyano, Satoru

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Meta graphical lasso: uncovering hidden interactions among latent mechanisms von Maruhashi, Koji, Kashima, Hisashi, Miyano, Satoru, Park, Heewon

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Understanding intratumor heterogeneity by combining genome analysis and mathematical modeling von Niida, Atsushi, Nagayama, Satoshi, Miyano, Satoru, Mimori, Koshi

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PredictiveNetwork: predictive gene network estimation with application to gastric cancer drug response-predictive network analysis von Park, Heewon, Imoto, Seiya, Miyano, Satoru

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Xprediction: Explainable EGFR-TKIs response prediction based on drug sensitivity specific gene networks von Park, Heewon, Yamaguchi, Rui, Imoto, Seiya, Miyano, Satoru

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RoDiCE: robust differential protein co-expression analysis for cancer complexome von Matsui, Yusuke, Abe, Yuichi, Uno, Kohei, Miyano, Satoru

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Molecular heterogeneity in peripheral T-cell lymphoma, not otherwise specified revealed by comprehensive genetic profiling von Watatani, Yosaku, Sato, Yasuharu, Miyoshi, Hiroaki, Sakamoto, Kana, Nishida, Kenji, Gion, Yuka, Nagata, Yasunobu, Shiraishi, Yuichi, Chiba, Kenichi, Tanaka, Hiroko, Zhao, Lanying, Ochi, Yotaro, Takeuchi, Yasuhide, Takeda, June, Ueno, Hiroo, Kogure, Yasunori, Shiozawa, Yusuke, Kakiuchi, Nobuyuki, Yoshizato, Tetsuichi, Nakagawa, Masahiro M., Nanya, Yasuhito, Yoshida, Kenichi, Makishima, Hideki, Sanada, Masashi, Sakata-Yanagimoto, Mamiko, Chiba, Shigeru, Matsuoka, Ryota, Noguchi, Masayuki, Hiramoto, Nobuhiro, Ishikawa, Takayuki, Kitagawa, Junichi, Nakamura, Nobuhiko, Tsurumi, Hisashi, Miyazaki, Tatsuhiko, Kito, Yusuke, Miyano, Satoru, Shimoda, Kazuya, Takeuchi, Kengo, Ohshima, Koichi, Yoshino, Tadashi, Ogawa, Seishi, Kataoka, Keisuke

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Somatic Mutations and Clonal Hematopoiesis in Aplastic Anemia von Yoshizato, Tetsuichi, Dumitriu, Bogdan, Hosokawa, Kohei, Makishima, Hideki, Yoshida, Kenichi, Townsley, Danielle, Sato-Otsubo, Aiko, Sato, Yusuke, Liu, Delong, Suzuki, Hiromichi, Wu, Colin O, Shiraishi, Yuichi, Clemente, Michael J, Kataoka, Keisuke, Shiozawa, Yusuke, Okuno, Yusuke, Chiba, Kenichi, Tanaka, Hiroko, Nagata, Yasunobu, Katagiri, Takamasa, Kon, Ayana, Sanada, Masashi, Scheinberg, Phillip, Miyano, Satoru, Maciejewski, Jaroslaw P, Nakao, Shinji, Young, Neal S, Ogawa, Seishi

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Genetic abnormalities in myelodysplasia and secondary acute myeloid leukemia: impact on outcome of stem cell transplantation von Yoshizato, Tetsuichi, Nannya, Yasuhito, Atsuta, Yoshiko, Shiozawa, Yusuke, Iijima-Yamashita, Yuka, Yoshida, Kenichi, Shiraishi, Yuichi, Suzuki, Hiromichi, Nagata, Yasunobu, Sato, Yusuke, Kakiuchi, Nobuyuki, Matsuo, Keitaro, Onizuka, Makoto, Kataoka, Keisuke, Chiba, Kenichi, Tanaka, Hiroko, Ueno, Hiroo, Nakagawa, Masahiro M., Przychodzen, Bartlomiej, Haferlach, Claudia, Kern, Wolfgang, Aoki, Kosuke, Itonaga, Hidehiro, Kanda, Yoshinobu, Sekeres, Mikkael A., Maciejewski, Jaroslaw P., Haferlach, Torsten, Miyazaki, Yasushi, Horibe, Keizo, Sanada, Masashi, Miyano, Satoru, Makishima, Hideki, Ogawa, Seishi

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Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization von Niida, Atsushi, Hasegawa, Takanori, Miyano, Satoru

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Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer von Fujimoto, Akihiro, Furuta, Mayuko, Totoki, Yasushi, Tsunoda, Tatsuhiko, Kato, Mamoru, Shiraishi, Yuichi, Tanaka, Hiroko, Taniguchi, Hiroaki, Kawakami, Yoshiiku, Ueno, Masaki, Gotoh, Kunihito, Ariizumi, Shun-ichi, Wardell, Christopher P, Hayami, Shinya, Nakamura, Toru, Aikata, Hiroshi, Arihiro, Koji, Boroevich, Keith A, Abe, Tetsuo, Nakano, Kaoru, Maejima, Kazuhiro, Sasaki-Oku, Aya, Ohsawa, Ayako, Shibuya, Tetsuo, Nakamura, Hiromi, Hama, Natsuko, Hosoda, Fumie, Arai, Yasuhito, Ohashi, Shoko, Urushidate, Tomoko, Nagae, Genta, Yamamoto, Shogo, Ueda, Hiroki, Tatsuno, Kenji, Ojima, Hidenori, Hiraoka, Nobuyoshi, Okusaka, Takuji, Kubo, Michiaki, Marubashi, Shigeru, Yamada, Terumasa, Hirano, Satoshi, Yamamoto, Masakazu, Ohdan, Hideki, Shimada, Kazuaki, Ishikawa, Osamu, Yamaue, Hiroki, Chayama, Kazuki, Miyano, Satoru, Aburatani, Hiroyuki, Shibata, Tatsuhiro, Nakagawa, Hidewaki

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Genomic characterization of biliary tract cancers identifies driver genes and predisposing mutations von Wardell, Christopher P., Fujita, Masashi, Yamada, Toru, Simbolo, Michele, Fassan, Matteo, Karlic, Rosa, Polak, Paz, Kim, Jaegil, Hatanaka, Yutaka, Maejima, Kazuhiro, Lawlor, Rita T., Nakanishi, Yoshitsugu, Mitsuhashi, Tomoko, Fujimoto, Akihiro, Furuta, Mayuko, Ruzzenente, Andrea, Conci, Simone, Oosawa, Ayako, Sasaki-Oku, Aya, Nakano, Kaoru, Tanaka, Hiroko, Yamamoto, Yujiro, Michiaki, Kubo, Kawakami, Yoshiiku, Aikata, Hiroshi, Ueno, Masaki, Hayami, Shinya, Gotoh, Kunihito, Ariizumi, Shun-ichi, Yamamoto, Masakazu, Yamaue, Hiroki, Chayama, Kazuaki, Miyano, Satoru, Getz, Gad, Scarpa, Aldo, Hirano, Satoshi, Nakamura, Toru, Nakagawa, Hidewaki

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Gene Regulatory Network-Classifier: Gene Regulatory Network-Based Classifier and Its Applications to Gastric Cancer Drug (5-Fluorouracil) Marker Identification von Park, Heewon, Imoto, Seiya, Miyano, Satoru

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Landscape and function of multiple mutations within individual oncogenes von Saito, Yuki, Koya, Junji, Araki, Mitsugu, Kogure, Yasunori, Shingaki, Sumito, Tabata, Mariko, McClure, Marni B., Yoshifuji, Kota, Matsumoto, Shigeyuki, Isaka, Yuta, Tanaka, Hiroko, Kanai, Takanori, Miyano, Satoru, Shiraishi, Yuichi, Okuno, Yasushi, Kataoka, Keisuke

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