Cooler: scalable storage for Hi-C data and other genomically labeled arrays von Abdennur, Nezar, Mirny, Leonid A

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The 3D Genome as Moderator of Chromosomal Communication von Dekker, Job, Mirny, Leonid

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Formation of Chromosomal Domains by Loop Extrusion von Fudenberg, Geoffrey, Imakaev, Maxim, Lu, Carolyn, Goloborodko, Anton, Abdennur, Nezar, Mirny, Leonid A.

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Chromosome Compaction by Active Loop Extrusion von Goloborodko, Anton, Marko, John F., Mirny, Leonid A.

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Chromatin organization by an interplay of loop extrusion and compartmental segregation von Nuebler, Johannes, Fudenberg, Geoffrey, Imakaev, Maxim, Abdennur, Nezar, Mirny, Leonid A.

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fractal globule as a model of chromatin architecture in the cell von Mirny, Leonid A

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Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization von Nora, Elphège P., Goloborodko, Anton, Valton, Anne-Laure, Gibcus, Johan H., Uebersohn, Alec, Abdennur, Nezar, Dekker, Job, Mirny, Leonid A., Bruneau, Benoit G.

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Two major mechanisms of chromosome organization von Mirny, Leonid A, Imakaev, Maxim, Abdennur, Nezar

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Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data von Dekker, Job, Marti-Renom, Marc A., Mirny, Leonid A.

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Chromatin loops as allosteric modulators of enhancer-promoter interactions von Doyle, Boryana, Fudenberg, Geoffrey, Imakaev, Maxim, Mirny, Leonid A

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Chromosome and protein folding: In search for unified principles von Mirny, Leonid A.

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Loop extrusion: theory meets single-molecule experiments von Banigan, Edward J., Mirny, Leonid A.

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Hematopoietic Stem Cells Are the Major Source of Multilineage Hematopoiesis in Adult Animals von Sawai, Catherine M., Babovic, Sonja, Upadhaya, Samik, Knapp, David J.H.F., Lavin, Yonit, Lau, Colleen M., Goloborodko, Anton, Feng, Jue, Fujisaki, Joji, Ding, Lei, Mirny, Leonid A., Merad, Miriam, Eaves, Connie J., Reizis, Boris

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Heterochromatin drives compartmentalization of inverted and conventional nuclei von Falk, Martin, Feodorova, Yana, Naumova, Natalia, Imakaev, Maxim, Lajoie, Bryan R., Leonhardt, Heinrich, Joffe, Boris, Dekker, Job, Fudenberg, Geoffrey, Solovei, Irina, Mirny, Leonid A.

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Nucleosome-mediated cooperativity between transcription factors von Mirny, Leonid A., Onuchic, José N.

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Organization of the Mitotic Chromosome von Naumova, Natalia, Imakaev, Maxim, Fudenberg, Geoffrey, Zhan, Ye, Lajoie, Bryan R., Mirny, Leonid A., Dekker, Job

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Cells use loop extrusion to weave and tie the genome von Mirny, Leonid A.

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Keeping chromatin in the loop(s) von Mirny, Leonid A., Solovei, Irina

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Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers von Spracklin, George, Abdennur, Nezar, Imakaev, Maxim, Chowdhury, Neil, Pradhan, Sriharsa, Mirny, Leonid A., Dekker, Job

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Ultrastructural Details of Mammalian Chromosome Architecture von Krietenstein, Nils, Abraham, Sameer, Venev, Sergey V., Abdennur, Nezar, Gibcus, Johan, Hsieh, Tsung-Han S., Parsi, Krishna Mohan, Yang, Liyan, Maehr, René, Mirny, Leonid A., Dekker, Job, Rando, Oliver J.

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