Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of... von Mirkin, Boris G, Fenner, Trevor I, Galperin, Michael Y, Koonin, Eugene V

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Remarkable Interkingdom Conservation of Intron Positions and Massive, Lineage-Specific Intron Loss and Gain in Eukaryotic Evolution von Rogozin, Igor B., Wolf, Yuri I., Sorokin, Alexander V., Mirkin, Boris G., Koonin, Eugene V.

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Hydrogen sulfide concentration in the milieu of the hydrated alanine dipeptide determines its polyproline II‐beta propensity: Main chain contribution to the energetic origin of the... von Mirkin, Noemi G., Krimm, Samuel

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Data Analysis and Optimization: In Honor of Boris Mirkin's 80th Birthday von Goldengorin, Boris, Kuznetsov, Sergei

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Braverman Readings in Machine Learning. Key Ideas from Inception to Current State: International Conference Commemorating the 40th Anniversary of Emmanuil Braverman's Decease, Bost... von Rozonoer, Lev, Mirkin, Boris, Muchnik, Ilya

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Milieu-Initiated Inversion of the Aqueous Polyproline II/β Propensity in the Alanine Tripeptide: Aggregation Origin of the Onset of Amyloid Formation von Mirkin, Noemi G, Krimm, Samuel

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Bimodular architecture of bacterial effector SAP05 that drives ubiquitin-independent targeted protein degradation von Liu, Qun, Maqbool, Abbas, Mirkin, Federico G, Singh, Yeshveer, Stevenson, Clare E M, Lawson, David M, Kamoun, Sophien, Huang, Weijie, Hogenhout, Saskia A

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Self-Adjusted Consensus Clustering with Agglomerate Algorithms von Mirkin, B. G., Parinov, A. A.

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Triadic Formal Concept Analysis and triclustering: searching for optimal patterns von Ignatov, Dmitry I., Gnatyshak, Dmitry V., Kuznetsov, Sergei O., Mirkin, Boris G.

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Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell von Makarova, Kira S., Wolf, Yuri I., Mekhedov, Sergey L., Mirkin, Boris G., Koonin, Eugene V.

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Other species in the aqueous environment of a peptide can invert its intrinsic solvated polyproline II/beta propensity: Implications for amyloid formation von Mirkin, Noemi G., Krimm, Samuel, Glaeser, Robert

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Potential energy functions: From consistent force fields to spectroscopically determined polarizable force fields von Palmo, Kim, Mannfors, Berit, Mirkin, Noemi G., Krimm, Samuel

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Note: charge transfer in a hydrated peptide group is determined mainly by its intrinsic hydrogen-bond energetics von Mirkin, Noemi G, Krimm, Samuel

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Water interaction differences determine the relative energetic stability of the polyproline II conformation of the alanine dipeptide in aqueous environments von Mirkin, Noemi G., Krimm, Samuel

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Analysis of the Pyramidalization of the Peptide Group Nitrogen:  Implications for Molecular Mechanics Energy Functions von Mannfors, Berit E, Mirkin, Noemi G, Palmo, Kim, Krimm, Samuel

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Bisecting K-Means and 1D Projection Divisive Clustering: A Unified Framework and Experimental Comparison von Kovaleva, Ekaterina V., Mirkin, Boris G.

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Amide III Mode φ, ψ Dependence in Peptides:  A Vibrational Frequency Map von Mirkin, Noemi G, Krimm, Samuel

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Intermolecular Coupling in Liquid and Crystalline States of trans-N-Methylacetamide Investigated by Polarized Raman and FT-IR Spectroscopies von Schweitzer-Stenner, Reinhard, Sieler, Guido, Mirkin, Noemi G, Krimm, Samuel

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Mathematical Classification and Clustering von Mirkin, Boris

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A polarizable electrostatic model of the N-methylacetamide dimer von Mannfors, B., Mirkin, N. G., Palmo, K., Krimm, S.

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