regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests von Gel, Bernat, Díez-Villanueva, Anna, Serra, Eduard, Buschbeck, Marcus, Peinado, Miguel A, Malinverni, Roberto

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Wanderer, an interactive viewer to explore DNA methylation and gene expression data in human cancer von Díez-Villanueva, Anna, Mallona, Izaskun, Peinado, Miguel A

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DNA methylation dynamics in cellular commitment and differentiation von Suelves, Mònica, Carrió, Elvira, Núñez-Álvarez, Yaiza, Peinado, Miguel A

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Evaluation of single CpG sites as proxies of CpG island methylation states at the genome scale von Barrera, Víctor, Peinado, Miguel A

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Identification of intergenerational epigenetic inheritance by whole genome DNA methylation analysis in trios von Díez-Villanueva, Anna, Martín, Berta, Moratalla-Navarro, Ferran, Morón-Duran, Francisco D., Galván-Femenía, Iván, Obón-Santacana, Mireia, Carreras, Anna, de Cid, Rafael, Peinado, Miguel A., Moreno, Victor

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The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells von Jordà, Mireia, Díez-Villanueva, Anna, Mallona, Izaskun, Martín, Berta, Lois, Sergi, Barrera, Víctor, Esteller, Manel, Vavouri, Tanya, Peinado, Miguel A

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Deconstruction of DNA Methylation Patterns During Myogenesis Reveals Specific Epigenetic Events in the Establishment of the Skeletal Muscle Lineage von carrió, Elvira, Díez‐Villanueva, Anna, Lois, Sergi, Mallona, Izaskun, Cases, Ildefonso, Forn, Marta, Peinado, Miguel A., Suelves, Mònica

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Functional CpG Methylation System in a Social Insect von Wang, Ying, Jorda, Mireia, Jones, Peter L, Maleszka, Ryszard, Ling, Xu, Robertson, Hugh M, Mizzen, Craig A, Peinado, Miguel A, Robinson, Gene E

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Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells von Rodriguez, Jairo, Muñoz, Mar, Vives, Laura, Frangou, Costas G, Groudine, Mark, Peinado, Miguel A

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Tissue and cancer-specific expression of DIEXF is epigenetically mediated by an Alu repeat von Martín, Berta, Pappa, Stella, Díez-Villanueva, Anna, Mallona, Izaskun, Custodio, Joaquín, Barrero, María José, Peinado, Miguel A., Jordà, Mireia

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Genome-wide tracking of unmethylated DNA Alu repeats in normal and cancer cells von Rodriguez, Jairo, Vives, Laura, Jordà, Mireia, Morales, Cristina, Muñoz, Mar, Vendrell, Elisenda, Peinado, Miguel A

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Overlapping DNA methylation dynamics in mouse intestinal cell differentiation and early stages of malignant progression von Forn, Marta, Díez-Villanueva, Anna, Merlos-Suárez, Anna, Muñoz, Mar, Lois, Sergi, Carriò, Elvira, Jordà, Mireia, Bigas, Anna, Batlle, Eduard, Peinado, Miguel A

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Differential DNA hypermethylation and hypomethylation signatures in colorectal cancer von Frigola, Jordi, Solé, Xavier, Paz, Maria F., Moreno, Victor, Esteller, Manel, Capellà, Gabriel, Peinado, Miguel A.

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Tumor Thymidylate Synthase 1494del6 Genotype As a Prognostic Factor in Colorectal Cancer Patients Receiving Fluorouracil-Based Adjuvant Treatment von DOTOR, Emma, CUATRECASES, Miriam, DE OCA, Javier, PEINADO, Miguel A, MORENO, Victor, GERMA, Josep Ramon, CAPELLD, Gabriel, VILLANUEVA, Alberto, MARTINEZ-INIESTA, Maria, NAVARRO, Matilde, VILARDELL, Felip, GUINO, Elisabeth, PAREJA, Laura, FIGUERAS, Agnés, MOLLEVI, David G, SERRANO, Teresa

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Dihydrofolate reductase amplification and sensitization to methotrexate of methotrexate-resistant colon cancer cells von Morales, Cristina, García, Maria J, Ribas, Maria, Miró, Rosa, Muñoz, Mar, Caldas, Carlos, Peinado, Miguel A

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Colorectal Cancer Is Associated with the Presence of Cancer Driver Mutations in Normal Colon von Matas, Julia, Kohrn, Brendan, Fredrickson, Jeanne, Carter, Kelly, Yu, Ming, Wang, Ting, Gui, Xianyong, Soussi, Thierry, Moreno, Victor, Grady, William M, Peinado, Miguel A, Risques, Rosa Ana

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Ubiquitous somatic mutations in simple repeated sequences reveal a new mechanism for colonic carcinogenesis von Ionov, Yurij, Peinado, Miguel A, Malkhosyan, Sergei, Shibata, Darryl, Perucho, Manuel

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Role of caveolin 1, E-cadherin, Enolase 2 and PKCalpha on resistance to methotrexate in human HT29 colon cancer cells von Selga, Elisabet, Morales, Cristina, Noé, Véronique, Peinado, Miguel A, Ciudad, Carlos J

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Truke, a web tool to check for and handle excel misidentified gene symbols von Mallona, Izaskun, Peinado, Miguel A

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The Pancancer DNA Methylation Trackhub: A Window to The Cancer Genome Atlas Epigenomics Data von Mallona, Izaskun, Sierco, Alberto, Peinado, Miguel A.

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