Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns von Enge, Martin, Arda, H. Efsun, Mignardi, Marco, Beausang, John, Bottino, Rita, Kim, Seung K., Quake, Stephen R.

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Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma von Darmanis, Spyros, Sloan, Steven A., Croote, Derek, Mignardi, Marco, Chernikova, Sophia, Samghababi, Peyman, Zhang, Ye, Neff, Norma, Kowarsky, Mark, Caneda, Christine, Li, Gordon, Chang, Steven D., Connolly, Ian David, Li, Yingmei, Barres, Ben A., Gephart, Melanie Hayden, Quake, Stephen R.

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Modeling Spatial Correlation of Transcripts with Application to Developing Pancreas von Liu, Ruishan, Mignardi, Marco, Jones, Robert, Enge, Martin, Kim, Seung K., Quake, Stephen R., Zou, James

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In situ sequencing identifies TMPRSS2-ERG fusion transcripts, somatic point mutations and gene expression levels in prostate cancers von Kiflemariam, Sara, Mignardi, Marco, Ali, Muhammad Akhtar, Bergh, Anders, Nilsson, Mats, Sjöblom, Tobias

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RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples von Wu, Chenglin, Simonetti, Michele, Rossell, Carla, Mignardi, Marco, Mirzazadeh, Reza, Annaratone, Laura, Marchiò, Caterina, Sapino, Anna, Bienko, Magda, Crosetto, Nicola, Nilsson, Mats

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In situ mutation detection and visualization of intratumor heterogeneity for cancer research and diagnostics von Grundberg, Ida, Kiflemariam, Sara, Mignardi, Marco, Imgenberg-Kreuz, Juliana, Edlund, Karolina, Micke, Patrick, Sundström, Magnus, Sjöblom, Tobias, Botling, Johan, Nilsson, Mats

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Single-cell transcriptomic atlas of the human endometrium during the menstrual cycle von Wang, Wanxin, Vilella, Felipe, Alama, Pilar, Moreno, Inmaculada, Mignardi, Marco, Isakova, Alina, Pan, Wenying, Simon, Carlos, Quake, Stephen R.

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In situ sequencing for RNA analysis in preserved tissue and cells von Ke, Rongqin, Mignardi, Marco, Pacureanu, Alexandra, Svedlund, Jessica, Botling, Johan, Wählby, Carolina, Nilsson, Mats

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SINGLE-SECTION MULTIOMICS MAPPED ACROSS FFPE TISSUE von Mielinis, Paulius, Turkekul, Mesruh, Walker, Dan, Drennon, Tingsheng, Stoeckius, Marlon, Mignardi, Marco, Galonska, Christina, Jurek, Aleksandra, Chen, Tina, Chan, Rena, Katiraee, Layla, Gallant, Caroline, Meschi, Francesca, Roelli, Patrick, Borgstrom, Erik, Weisenfeld, Neil, Ganapathy, Karthik, Williams, Stephen R., Bent, Zachary W., Chell, James

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Fourth Generation of Next-Generation Sequencing Technologies: Promise and Consequences von Ke, Rongqin, Mignardi, Marco, Hauling, Thomas, Nilsson, Mats

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Fourth-generation sequencing in the cell and the clinic von Mignardi, Marco, Nilsson, Mats

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A single-cell transcriptomic atlas characterizes ageing tissues in the mouse von Almanzar, Nicole, Antony, Jane, Baghel, Ankit S, Bakerman, Isaac, Bansal, Ishita, Barres, Ben A, Beachy, Philip A

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Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris von Schaum, Nicholas, Karkanias, Jim, Neff, Norma F., May, Andrew P., Quake, Stephen R., Wyss-Coray, Tony, Darmanis, Spyros, Batson, Joshua, Botvinnik, Olga, Chen, Michelle B., Chen, Steven, Green, Foad, Jones, Robert, Maynard, Ashley, Penland, Lolita, Pisco, Angela Oliveira, Sit, Rene V., Stanley, Geoffrey M., Webber, James T., Zanini, Fabio, Baghel, Ankit S, Bakerman, Isaac, Bansal, Ishita, Berdnik, Daniela, Bilen, Biter, Brownfield, Douglas, Cain, Corey, Cho, Min, Cirolia, Giana, Conley, Stephanie D., Darmanis, Spyros, Demers, Aaron, Demir, Kubilay, de Morree, Antoine, Divita, Tessa, du Bois, Haley, Dulgeroff, Laughing Bear Torrez, Ebadi, Hamid, Espinoza, F. Hernán, Fish, Matt, Gan, Qiang, George, Benson M., Gillich, Astrid, Genetiano, Geraldine, Gu, Xueying, Gulati, Gunsagar S., Hang, Yan, Hosseinzadeh, Shayan, Huang, Albin, Iram, Tal, Isobe, Taichi, Ives, Feather, Kao, Kevin S., Karnam, Guruswamy, Kershner, Aaron M., Kiss, Bernhard M., Kong, William, Kumar, Maya E., Lam, Jonathan, Lee, Davis P., Lee, Song E., Li, Guang, Li, Qingyun, Liu, Ling, Lo, Annie, Lu, Wan-Jin, Manjunath, Anoop, May, Kaia L., May, Oliver L., McKay, Marina, Metzger, Ross J., Mignardi, Marco, Min, Dullei, Nabhan, Ahmad N., Ng, Katharine M., Noh, Joseph, Patkar, Rasika, Peng, Weng Chuan, Puccinelli, Robert, Rulifson, Eric J., Sikandar, Shaheen S., Sinha, Rahul, Szade, Krzysztof, Tan, Weilun, Tato, Cristina, Tellez, Krissie, Travaglini, Kyle J., Tropini, Carolina, Waldburger, Lucas, van Weele, Linda J., Wosczyna, Michael N., Xiang, Jinyi, Xue, Soso, Youngyunpipatkul, Justin, Zardeneta, Macy E., Zhang, Fan, Zhou, Lu, oungyunpipatkul, Justin Y, Castro, Paola, Croote, Derek

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Ageing hallmarks exhibit organ-specific temporal signatures von Schaum, Nicholas, Lehallier, Benoit, Hahn, Oliver, Pálovics, Róbert, Hosseinzadeh, Shayan, Lee, Song E., Sit, Rene, Lee, Davis P., Losada, Patricia Morán, Zardeneta, Macy E., Fehlmann, Tobias, Webber, James T., McGeever, Aaron, Calcuttawala, Kruti, Zhang, Hui, Berdnik, Daniela, Mathur, Vidhu, Tan, Weilun, Zee, Alexander, Tan, Michelle, Pisco, Angela Oliveira, Karkanias, Jim, Neff, Norma F., Keller, Andreas, Darmanis, Spyros, Quake, Stephen R., Wyss-Coray, Tony

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Regeneration-associated WNT Signaling Is Activated in Long-term Reconstituting AC133bright Acute Myeloid Leukemia Cells von Beghini, Alessandro, Corlazzoli, Francesca, Del Giacco, Luca, Re, Matteo, Lazzaroni, Francesca, Brioschi, Matteo, Valentini, Giorgio, Ferrazzi, Fulvia, Ghilardi, Anna, Righi, Marco, Turrini, Mauro, Mignardi, Marco, Cesana, Clara, Bronte, Vincenzo, Nilsson, Mats, Morra, Enrica, Cairoli, Roberto

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Bridging Histology and Bioinformatics-Computational Analysis of Spatially Resolved Transcriptomics von Mignardi, Marco, Ishaq, Omer, Qian, Xiaoyan, Wahlby, Carolina

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Molecular hallmarks of heterochronic parabiosis at single-cell resolution von Pálovics, Róbert, Keller, Andreas, Schaum, Nicholas, Tan, Weilun, Fehlmann, Tobias, Borja, Michael, Kern, Fabian, Bonanno, Liana, Calcuttawala, Kruti, Webber, James, McGeever, Aaron, Luo, Jian, Pisco, Angela Oliveira, Karkanias, Jim, Neff, Norma F., Darmanis, Spyros, Quake, Stephen R., Wyss-Coray, Tony

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Abstract 2696: Spatially resolved whole transcriptome molecular investigation of FFPE triple positive breast cancer tumors using the Visium platform von Williams, Stephen R., Turkekul, Mesruh, Jurek, Aleksandra, Mignardi, Marco, Mielinis, Paulius, Weisenfeld, Neil I., Stoeckius, Marlon, Chell, James

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In situ detection of individual mRNA molecules and protein complexes or post-translational modifications using padlock probes combined with the in situ proximity ligation assay von Weibrecht, Irene, Lundin, Elin, Kiflemariam, Sara, Mignardi, Marco, Grundberg, Ida, Larsson, Chatarina, Koos, Björn, Nilsson, Mats, Söderberg, Ola

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Oligonucleotide gap-fill ligation for mutation detection and sequencing in situ von Mignardi, Marco, Mezger, Anja, Qian, Xiaoyan, La Fleur, Linnea, Botling, Johan, Larsson, Chatarina, Nilsson, Mats

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