igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV) von Robinson, James T, Thorvaldsdottir, Helga, Turner, Douglass, Mesirov, Jill P

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The Molecular Signatures Database Hallmark Gene Set Collection von Liberzon, Arthur, Birger, Chet, Thorvaldsdóttir, Helga, Ghandi, Mahmoud, Mesirov, Jill P., Tamayo, Pablo

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Accessible Reproducible Research von Mesirov, Jill P.

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Variant Review with the Integrative Genomics Viewer von Robinson, James T, Thorvaldsdóttir, Helga, Wenger, Aaron M, Zehir, Ahmet, Mesirov, Jill P

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Molecular signatures database (MSigDB) 3.0 von LIBERZON, Arthur, SUBRAMANIAN, Aravind, PINCHBACK, Reid, THORVALDSDOTTIR, Helga, TAMAYO, Pablo, MESIROV, Jill P

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Compendium of Immune Signatures Identifies Conserved and Species-Specific Biology in Response to Inflammation von Godec, Jernej, Tan, Yan, Liberzon, Arthur, Tamayo, Pablo, Bhattacharya, Sanchita, Butte, Atul J., Mesirov, Jill P., Haining, W. Nicholas

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Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration von Thorvaldsdóttir, Helga, Robinson, James T, Mesirov, Jill P

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Extending support for mouse data in the Molecular Signatures Database (MSigDB) von Castanza, Anthony S., Recla, Jill M., Eby, David, Thorvaldsdóttir, Helga, Bult, Carol J., Mesirov, Jill P.

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β-Catenin-Driven Cancers Require a YAP1 Transcriptional Complex for Survival and Tumorigenesis von Rosenbluh, Joseph, Nijhawan, Deepak, Cox, Andrew G., Li, Xingnan, Neal, James T., Schafer, Eric J., Zack, Travis I., Wang, Xiaoxing, Tsherniak, Aviad, Schinzel, Anna C., Shao, Diane D., Schumacher, Steven E., Weir, Barbara A., Vazquez, Francisca, Cowley, Glenn S., Root, David E., Mesirov, Jill P., Beroukhim, Rameen, Kuo, Calvin J., Goessling, Wolfram, Hahn, William C.

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RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure von Lu, Zhipeng, Zhang, Qiangfeng Cliff, Lee, Byron, Flynn, Ryan A., Smith, Martin A., Robinson, James T., Davidovich, Chen, Gooding, Anne R., Goodrich, Karen J., Mattick, John S., Mesirov, Jill P., Cech, Thomas R., Chang, Howard Y.

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GSEA-P: a desktop application for Gene Set Enrichment Analysis von Subramanian, Aravind, Kuehn, Heidi, Gould, Joshua, Tamayo, Pablo, Mesirov, Jill P.

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Integrative genomics viewer von Robinson, James T, Mesirov, Jill P, Thorvaldsdóttir, Helga, Winckler, Wendy, Guttman, Mitchell, Lander, Eric S, Getz, Gad

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A Curated Resource for Phosphosite-specific Signature Analysis[S] von Krug, Karsten, Mertins, Philipp, Zhang, Bin, Hornbeck, Peter, Raju, Rajesh, Ahmad, Rushdy, Szucs, Matthew, Mundt, Filip, Forestier, Dominique, Jane-Valbuena, Judit, Keshishian, Hasmik, Gillette, Michael A., Tamayo, Pablo, Mesirov, Jill P., Jaffe, Jacob D., Carr, StevenA, Mani, D.R.

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Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data von Robinson, James T., Turner, Douglass, Durand, Neva C., Thorvaldsdóttir, Helga, Mesirov, Jill P., Aiden, Erez Lieberman

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Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom von Durand, Neva C., Robinson, James T., Shamim, Muhammad S., Machol, Ido, Mesirov, Jill P., Lander, Eric S., Aiden, Erez Lieberman

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Quantitative visualization of alternative exon expression from RNA-seq data von Katz, Yarden, Wang, Eric T, Silterra, Jacob, Schwartz, Schraga, Wong, Bang, Thorvaldsdóttir, Helga, Robinson, James T, Mesirov, Jill P, Airoldi, Edoardo M, Burge, Christopher B

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Cancer Vulnerabilities Unveiled by Genomic Loss von Nijhawan, Deepak, Zack, Travis I., Ren, Yin, Strickland, Matthew R., Lamothe, Rebecca, Schumacher, Steven E., Tsherniak, Aviad, Besche, Henrike C., Rosenbluh, Joseph, Shehata, Shyemaa, Cowley, Glenn S., Weir, Barbara A., Goldberg, Alfred L., Mesirov, Jill P., Root, David E., Bhatia, Sangeeta N., Beroukhim, Rameen, Hahn, William C.

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Integrative Genomic Analysis of Medulloblastoma Identifies a Molecular Subgroup That Drives Poor Clinical Outcome von CHO, Yoon-Jae, TSHERNIAK, Aviad, LAU, Ching C, OLSON, James M, GILBERTSON, Richard I, GAJJAR, Amar, DELATTRE, Olivier, KOOL, Marcel, LIGON, Keith, MEYERSON, Matthew, MESIROV, Jill P, POMEROY, Scott L, TAMAYO, Pablo, SANTAGATA, Sandro, LIGON, Azra, GREULICH, Heidi, BERHOUKIM, Rameen, AMANI, Vladimir, GOUMNEROVA, Liliana, EBERHART, Charles G

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Gene signatures related to B‐cell proliferation predict influenza vaccine‐induced antibody response von Tan, Yan, Tamayo, Pablo, Nakaya, Helder, Pulendran, Bali, Mesirov, Jill P., Haining, W. Nicholas

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Carcinoma-associated fibroblast-like differentiation of human mesenchymal stem cells von Mishra, Pravin J, Mishra, Prasun J, Humeniuk, Rita, Medina, Daniel J, Alexe, Gabriela, Mesirov, Jill P, Ganesan, Sridhar, Glod, John W, Banerjee, Debabrata

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