Bacterial Pangenomics: Methods and Protocols

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Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium von diCenzo, George C., Tesi, Michelangelo, Pfau, Thomas, Mengoni, Alessio, Fondi, Marco

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Moving toward the Inclusion of Epigenomics in Bacterial Genome Evolution: Perspectives and Challenges von Passeri, Iacopo, Vaccaro, Francesca, Mengoni, Alessio, Fagorzi, Camilla

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Chromids Aid Genome Expansion and Functional Diversification in the Family Burkholderiaceae von diCenzo, George C, Mengoni, Alessio, Perrin, Elena

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Scent of a Symbiont: The Personalized Genetic Relationships of Rhizobium-Plant Interaction von Cangioli, Lisa, Vaccaro, Francesca, Fini, Margherita, Mengoni, Alessio, Fagorzi, Camilla

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Endophytes: Improving Plant Performance von Fagorzi, Camilla, Mengoni, Alessio

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Comparative genomics and pangenome-oriented studies reveal high homogeneity of the agronomically relevant enterobacterial plant pathogen Dickeya solani von Motyka-Pomagruk, Agata, Zoledowska, Sabina, Misztak, Agnieszka Emilia, Sledz, Wojciech, Mengoni, Alessio, Lojkowska, Ewa

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Trade, Diplomacy, and Warfare: The Quest for Elite Rhizobia Inoculant Strains von Checcucci, Alice, DiCenzo, George C, Bazzicalupo, Marco, Mengoni, Alessio

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Coordinated regulation of core and accessory genes in the multipartite genome of Sinorhizobium fredii von Jiao, Jian, Ni, Meng, Zhang, Biliang, Zhang, Ziding, Young, J Peter W, Chan, Ting-Fung, Chen, Wen Xin, Lam, Hon-Ming, Tian, Chang Fu

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Differential Response of Wheat Rhizosphere Bacterial Community to Plant Variety and Fertilization von Cangioli, Lisa, Mancini, Marco, Napoli, Marco, Fagorzi, Camilla, Orlandini, Simone, Vaccaro, Francesca, Mengoni, Alessio

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Tissue specificity and differential effects on in vitro plant growth of single bacterial endophytes isolated from the roots, leaves and rhizospheric soil of Echinacea purpurea von Maggini, Valentina, Mengoni, Alessio, Gallo, Eugenia Rosaria, Biffi, Sauro, Fani, Renato, Firenzuoli, Fabio, Bogani, Patrizia

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Differences in the constituents of bacterial microbiota of soils collected from two fields of diverse potato blackleg and soft rot diseases incidences, a case study von Babinska-Wensierska, Weronika, Motyka-Pomagruk, Agata, Fondi, Marco, Misztak, Agnieszka Emilia, Mengoni, Alessio, Lojkowska, Ewa

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Plant-endophytes interaction influences the secondary metabolism in Echinacea purpurea (L.) Moench: an in vitro model von Maggini, Valentina, De Leo, Marinella, Mengoni, Alessio, Gallo, Eugenia Rosaria, Miceli, Elisangela, Reidel, Rose Vanessa Bandeira, Biffi, Sauro, Pistelli, Luisa, Fani, Renato, Firenzuoli, Fabio, Bogani, Patrizia

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Harnessing Rhizobia to Improve Heavy-Metal Phytoremediation by Legumes von Fagorzi, Camilla, Checcucci, Alice, diCenzo, George C, Debiec-Andrzejewska, Klaudia, Dziewit, Lukasz, Pini, Francesco, Mengoni, Alessio

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Crossing Bacterial Genomic Features and Methylation Patterns with MeStudio: An Epigenomic Analysis Tool von Riccardi, Christopher, Passeri, Iacopo, Cangioli, Lisa, Fagorzi, Camilla, Fondi, Marco, Mengoni, Alessio

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Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti von diCenzo, George C., Checcucci, Alice, Bazzicalupo, Marco, Mengoni, Alessio, Viti, Carlo, Dziewit, Lukasz, Finan, Turlough M., Galardini, Marco, Fondi, Marco

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Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti von diCenzo, George C, Benedict, Alex B, Fondi, Marco, Walker, Graham C, Finan, Turlough M, Mengoni, Alessio, Griffitts, Joel S

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Preliminary Comparison of Oral and Intestinal Human Microbiota in Patients with Colorectal Cancer: A Pilot Study von Russo, Edda, Bacci, Giovanni, Chiellini, Carolina, Fagorzi, Camilla, Niccolai, Elena, Taddei, Antonio, Ricci, Federica, Ringressi, Maria N, Borrelli, Rossella, Melli, Filippo, Miloeva, Manouela, Bechi, Paolo, Mengoni, Alessio, Fani, Renato, Amedei, Amedeo

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Perspectives and Challenges in Microbial Communities Metabolic Modeling von Bosi, Emanuele, Bacci, Giovanni, Mengoni, Alessio, Fondi, Marco

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Soil bacterial community response to differences in agricultural management along with seasonal changes in a Mediterranean region von Bevivino, Annamaria, Paganin, Patrizia, Bacci, Giovanni, Florio, Alessandro, Pellicer, Maite Sampedro, Papaleo, Maria Cristiana, Mengoni, Alessio, Ledda, Luigi, Fani, Renato, Benedetti, Anna, Dalmastri, Claudia

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