CX3CR1 + mononuclear phagocytes control immunity to intestinal fungi von Leonardi, Irina, Li, Xin, Semon, Alexa, Li, Dalin, Doron, Itai, Putzel, Gregory, Bar, Agnieszka, Prieto, Daniel, Rescigno, Maria, McGovern, Dermot P B, Pla, Jesus, Iliev, Iliyan D

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Gene-microbiota interactions contribute to the pathogenesis of inflammatory bowel disease von Chu, Hiutung, Khosravi, Arya, Kusumawardhani, Indah P., Kwon, Alice H. K., Vasconcelos, Anilton C., Cunha, Larissa D., Mayer, Anne E., Shen, Yue, Wu, Wei-Li, Kambal, Amal, Targan, Stephan R., Xavier, Ramnik J., Ernst, Peter B., Green, Douglas R., McGovern, Dermot P. B., Virgin, Herbert W., Mazmanian, Sarkis K.

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Interactions Between Commensal Fungi and the C-Type Lectin Receptor Dectin-1 Influence Colitis von Iliev, Iliyan D., Funari, Vincent A., Taylor, Kent D., Nguyen, Quoclinh, Reyes, Christopher N., Strom, Samuel P., Brown, Jordan, Becker, Courtney A., Fleshner, Phillip R., Dubinsky, Marla, Rotter, Jerome I., Wang, Hanlin L., McGovern, Dermot P. B., Brown, Gordon D., Underhill, David M.

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A common missense variant in NUDT15 confers susceptibility to thiopurine-induced leukopenia von Yang, Suk-Kyun, Hong, Myunghee, Baek, Jiwon, Choi, Hyunchul, Zhao, Wanting, Jung, Yusun, Haritunians, Talin, Ye, Byong Duk, Kim, Kyung-Jo, Park, Sang Hyoung, Park, Soo-Kyung, Yang, Dong-Hoon, Dubinsky, Marla, Lee, Inchul, McGovern, Dermot P B, Liu, Jianjun, Song, Kyuyoung

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Myeloid ATG16L1 Facilitates Host-Bacteria Interactions in Maintaining Intestinal Homeostasis von Zhang, Hong, Zheng, Libo, McGovern, Dermot P B, Hamill, Ariel M, Ichikawa, Ryan, Kanazawa, Yoshitake, Luu, Justin, Kumagai, Kotaro, Cilluffo, Marianne, Fukata, Masayuki, Targan, Stephan R, Underhill, David M, Zhang, Xiaolan, Shih, David Q

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A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease von Tong, Maomeng, Li, Xiaoxiao, Wegener Parfrey, Laura, Roth, Bennett, Ippoliti, Andrew, Wei, Bo, Borneman, James, McGovern, Dermot P B, Frank, Daniel N, Li, Ellen, Horvath, Steve, Knight, Rob, Braun, Jonathan

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Dynamics of metatranscription in the inflammatory bowel disease gut microbiome von Schirmer, Melanie, Franzosa, Eric A., Lloyd-Price, Jason, McIver, Lauren J., Schwager, Randall, Poon, Tiffany W., Ananthakrishnan, Ashwin N., Andrews, Elizabeth, Barron, Gildardo, Lake, Kathleen, Prasad, Mahadev, Sauk, Jenny, Stevens, Betsy, Wilson, Robin G., Braun, Jonathan, Denson, Lee A., Kugathasan, Subra, McGovern, Dermot P. B., Vlamakis, Hera, Xavier, Ramnik J., Huttenhower, Curtis

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Meta-analysis of gene expression disease signatures in colonic biopsy tissue from patients with ulcerative colitis von Linggi, Bryan, Jairath, Vipul, Zou, Guangyong, Shackelton, Lisa M., McGovern, Dermot P. B., Salas, Azucena, Verstockt, Bram, Silverberg, Mark S., Nayeri, Shadi, Feagan, Brian G., Vande Casteele, Niels

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Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease von Norman, Jason M., Handley, Scott A., Baldridge, Megan T., Droit, Lindsay, Liu, Catherine Y., Keller, Brian C., Kambal, Amal, Monaco, Cynthia L., Zhao, Guoyan, Fleshner, Phillip, Stappenbeck, Thaddeus S., McGovern, Dermot P.B., Keshavarzian, Ali, Mutlu, Ece A., Sauk, Jenny, Gevers, Dirk, Xavier, Ramnik J., Wang, David, Parkes, Miles, Virgin, Herbert W.

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A Paratope-Enhanced Method to Determine Breadth and Depth TCR Clonal Metrics of the Private Human T-Cell Vaccine Response after SARS-CoV-2 Vaccination von Li, Dalin, Pavlovitch-Bedzyk, Ana Jimena, Ebinger, Joseph E, Khan, Abdul, Hamideh, Mohamed, Merchant, Akil, Figueiredo, Jane C, Cheng, Susan, Davis, Mark M, McGovern, Dermot P B, Melmed, Gil Y, Xu, Alexander M, Braun, Jonathan

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Crohn's disease in endoscopic remission, obesity, and cases of high genetic risk demonstrates overlapping shifts in the colonic mucosal-luminal interface microbiome von Jacobs, Jonathan P, Goudarzi, Maryam, Lagishetty, Venu, Li, Dalin, Mak, Tytus, Tong, Maomeng, Ruegger, Paul, Haritunians, Talin, Landers, Carol, Fleshner, Philip, Vasiliauskas, Eric, Ippoliti, Andrew, Melmed, Gil, Shih, David, Targan, Stephan, Borneman, James, Fornace, Jr, Albert J, McGovern, Dermot P B, Braun, Jonathan

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The role of admixture in the rare variant contribution to inflammatory bowel disease von Astore, Courtney, Sharma, Shivam, Nagpal, Sini, Cutler, David J, Rioux, John D, Cho, Judy H, McGovern, Dermot P B, Brant, Steven R, Kugathasan, Subra, Jordan, I King, Gibson, Greg

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A Systematic Review of Monogenic Inflammatory Bowel Disease von Nambu, Ryusuke, Warner, Neil, Mulder, Daniel J., Kotlarz, Daniel, McGovern, Dermot P.B., Cho, Judy, Klein, Christoph, Snapper, Scott B., Griffiths, Anne M., Iwama, Itaru, Muise, Aleixo M.

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IBD-associated TL1A gene (TNFSF15) haplotypes determine increased expression of TL1A protein von Michelsen, Kathrin S, Thomas, Lisa S, Taylor, Kent D, Yu, Qi T, Mei, Ling, Landers, Carol J, Derkowski, Carrie, McGovern, Dermot P B, Rotter, Jerome I, Targan, Stephan R

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Microbiotas from Humans with Inflammatory Bowel Disease Alter the Balance of Gut Th17 and RORγt+ Regulatory T Cells and Exacerbate Colitis in Mice von Britton, Graham J., Contijoch, Eduardo J., Mogno, Ilaria, Vennaro, Olivia H., Llewellyn, Sean R., Ng, Ruby, Li, Zhihua, Mortha, Arthur, Merad, Miriam, Das, Anuk, Gevers, Dirk, McGovern, Dermot P.B., Singh, Namita, Braun, Jonathan, Jacobs, Jonathan P., Clemente, Jose C., Grinspan, Ari, Sands, Bruce E., Colombel, Jean-Frederic, Dubinsky, Marla C., Faith, Jeremiah J.

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Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients von Wu, Yiming, Gettler, Kyle, Kars, Meltem Ece, Giri, Mamta, Li, Dalin, Bayrak, Cigdem Sevim, Zhang, Peng, Jain, Aayushee, Maffucci, Patrick, Sabic, Ksenija, Van Vleck, Tielman, Nadkarni, Girish, Denson, Lee A., Ostrer, Harry, Levine, Adam P., Schiff, Elena R., Segal, Anthony W., Kugathasan, Subra, Stenson, Peter D., Cooper, David N., Philip Schumm, L., Snapper, Scott, Daly, Mark J., Haritunians, Talin, Duerr, Richard H., Silverberg, Mark S., Rioux, John D., Brant, Steven R., McGovern, Dermot P. B., Cho, Judy H., Itan, Yuval

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Phosphorylation of FOXO3a on Ser-7 by p38 Promotes Its Nuclear Localization in Response to Doxorubicin von Ho, Ka-Kei, McGuire, Victoria A., Koo, Chuay-Yeng, Muir, Kyle W., de Olano, Natalia, Maifoshie, Evie, Kelly, Douglas J., McGovern, Ursula B., Monteiro, Lara J., Gomes, Ana R., Nebreda, Angel R., Campbell, David G., Arthur, J. Simon C., Lam, Eric W.-F.

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Genetic Analysis of Ulcerative Colitis in Japanese Individuals Using Population-specific SNP Array von Okamoto, Daisuke, Kawai, Yosuke, Kakuta, Yoichi, Naito, Takeo, Torisu, Takehiro, Hirano, Atsushi, Umeno, Junji, Fuyuno, Yuta, Li, Dalin, Nakano, Takeru, Izumiyama, Yasuhiro, Ichikawa, Ryo, Hiramoto, Keiichiro, Moroi, Rintaro, Kuroha, Masatake, Kanazawa, Yoshitake, Shiga, Hisashi, Tokunaga, Katsushi, Nakamura, Minoru, Esaki, Motohiro, Matsumoto, Takayuki, McGovern, Dermot P B, Nagasaki, Masao, Kinouchi, Yoshitaka, Masamune, Atsushi

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Poor prognostic factors of pharmacokinetic origin predict outcomes in inflammatory bowel disease patients treated with anti-tumor necrosis factor-α von Spencer, Elizabeth A, Dubinsky, Marla C, Kamm, Michael A, Chaparro, Maria, Gionchetti, Paolo, Rizzello, Fernando, Gisbert, Javier P, Wright, Emily K, Schulberg, Julien D, Hamilton, Amy L, McGovern, Dermot P B, Dervieux, Thierry

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Magnetic resonance imaging for characterization of hepatocellular carcinoma metabolism von Wang, Lixia, Yang, Ju Dong, Yoo, Charles C, Lai, Keane K Y, Braun, Jonathan, McGovern, Dermot P B, Xie, Yibin, Pandol, Stephen J, Lu, Shelly C, Li, Debiao

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