Inhibition of BTK and ITK with Ibrutinib Is Effective in the Prevention of Chronic Graft-versus-Host Disease in Mice von Schutt, Steven D, Fu, Jianing, Nguyen, Hung, Bastian, David, Heinrichs, Jessica, Wu, Yongxia, Liu, Chen, McDonald, Daniel G, Pidala, Joseph, Yu, Xue-Zhong

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rtestim: Time-varying reproduction number estimation with trend filtering von Liu, Jiaping, Cai, Zhenglun, Gustafson, Paul, McDonald, Daniel J

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A wellness study of 108 individuals using personal, dense, dynamic data clouds von Price, Nathan D, Magis, Andrew T, Earls, John C, Glusman, Gustavo, Levy, Roie, Lausted, Christopher, McDonald, Daniel T, Kusebauch, Ulrike, Moss, Christopher L, Zhou, Yong, Qin, Shizhen, Moritz, Robert L, Brogaard, Kristin, Omenn, Gilbert S, Lovejoy, Jennifer C, Hood, Leroy

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Strains, functions and dynamics in the expanded Human Microbiome Project von Lloyd-Price, Jason, Mahurkar, Anup, Rahnavard, Gholamali, Crabtree, Jonathan, Orvis, Joshua, Hall, A. Brantley, Brady, Arthur, Creasy, Heather H., McCracken, Carrie, Giglio, Michelle G., McDonald, Daniel, Franzosa, Eric A., Knight, Rob, White, Owen, Huttenhower, Curtis

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences von Langille, Morgan G I, Zaneveld, Jesse, Caporaso, J Gregory, McDonald, Daniel, Knights, Dan, Reyes, Joshua A, Clemente, Jose C, Burkepile, Deron E, Vega Thurber, Rebecca L, Knight, Rob, Beiko, Robert G, Huttenhower, Curtis

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Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians von Allaband, Celeste, McDonald, Daniel, Vázquez-Baeza, Yoshiki, Minich, Jeremiah J., Tripathi, Anupriya, Brenner, David A., Loomba, Rohit, Smarr, Larry, Sandborn, William J., Schnabl, Bernd, Dorrestein, Pieter, Zarrinpar, Amir, Knight, Rob

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The Microbiome and Human Biology von Knight, Rob, Callewaert, Chris, Marotz, Clarisse, Hyde, Embriette R, Debelius, Justine W, McDonald, Daniel, Sogin, Mitchell L

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Less is more: balancing noise reduction and data retention in fMRI with data-driven scrubbing von Phạm, Damon Đ, McDonald, Daniel J., Ding, Lei, Nebel, Mary Beth, Mejia, Amanda F.

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Greengenes2 unifies microbial data in a single reference tree von McDonald, Daniel, Jiang, Yueyu, Balaban, Metin, Cantrell, Kalen, Zhu, Qiyun, Gonzalez, Antonio, Morton, James T., Nicolaou, Giorgia, Parks, Donovan H., Karst, Søren M., Albertsen, Mads, Hugenholtz, Philip, DeSantis, Todd, Song, Se Jin, Bartko, Andrew, Havulinna, Aki S., Jousilahti, Pekka, Cheng, Susan, Inouye, Michael, Niiranen, Teemu, Jain, Mohit, Salomaa, Veikko, Lahti, Leo, Mirarab, Siavash, Knight, Rob

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Regional variation limits applications of healthy gut microbiome reference ranges and disease models von He, Yan, Wu, Wei, Zheng, Hui-Min, Li, Pan, McDonald, Daniel, Sheng, Hua-Fang, Chen, Mu-Xuan, Chen, Zi-Hui, Ji, Gui-Yuan, Zheng, Zhong-Dai-Xi, Mujagond, Prabhakar, Chen, Xiao-Jiao, Rong, Zu-Hua, Chen, Peng, Lyu, Li-Yi, Wang, Xian, Wu, Chong-Bin, Yu, Nan, Xu, Yan-Jun, Yin, Jia, Raes, Jeroen, Knight, Rob, Ma, Wen-Jun, Zhou, Hong-Wei

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Species abundance information improves sequence taxonomy classification accuracy von Kaehler, Benjamin D., Bokulich, Nicholas A., McDonald, Daniel, Knight, Rob, Caporaso, J. Gregory, Huttley, Gavin A.

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Medial joint line tenderness is an indicator for meniscal injuries in dogs von McDonald, Daniel J, Nakahara, Nima, Gal, Arnon, Mitchell, Richard A S

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Forensic identification using skin bacterial communities von Fierer, Noah, Lauber, Christian L, Zhou, Nick, McDonald, Daniel, Costello, Elizabeth K, Knight, Rob

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Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea von Zhu, Qiyun, Mai, Uyen, Pfeiffer, Wayne, Janssen, Stefan, Asnicar, Francesco, Sanders, Jon G., Belda-Ferre, Pedro, Al-Ghalith, Gabriel A., Kopylova, Evguenia, McDonald, Daniel, Kosciolek, Tomasz, Yin, John B., Huang, Shi, Salam, Nimaichand, Jiao, Jian-Yu, Wu, Zijun, Xu, Zhenjiang Z., Cantrell, Kalen, Yang, Yimeng, Sayyari, Erfan, Rabiee, Maryam, Morton, James T., Podell, Sheila, Knights, Dan, Li, Wen-Jun, Huttenhower, Curtis, Segata, Nicola, Smarr, Larry, Mirarab, Siavash, Knight, Rob

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Leave-one-out cross-validation is risk consistent for lasso von Homrighausen, Darren, McDonald, Daniel J.

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The Treatment-Naive Microbiome in New-Onset Crohn’s Disease von Gevers, Dirk, Kugathasan, Subra, Denson, Lee A., Vázquez-Baeza, Yoshiki, Van Treuren, Will, Ren, Boyu, Schwager, Emma, Knights, Dan, Song, Se Jin, Yassour, Moran, Morgan, Xochitl C., Kostic, Aleksandar D., Luo, Chengwei, González, Antonio, McDonald, Daniel, Haberman, Yael, Walters, Thomas, Baker, Susan, Rosh, Joel, Stephens, Michael, Heyman, Melvin, Markowitz, James, Baldassano, Robert, Griffiths, Anne, Sylvester, Francisco, Mack, David, Kim, Sandra, Crandall, Wallace, Hyams, Jeffrey, Huttenhower, Curtis, Knight, Rob, Xavier, Ramnik J.

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Predicting phenotypes from microarrays using amplified, initially marginal, eigenvector regression von Ding, Lei, McDonald, Daniel J

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The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome von McDonald, Daniel, Clemente, Jose C, Kuczynski, Justin, Rideout, Jai Ram, Stombaugh, Jesse, Wendel, Doug, Wilke, Andreas, Huse, Susan, Hufnagle, John, Meyer, Folker, Knight, Rob, Caporaso, J Gregory

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GABA-modulating bacteria of the human gut microbiota von Strandwitz, Philip, Kim, Ki Hyun, Terekhova, Darya, Liu, Joanne K., Sharma, Anukriti, Levering, Jennifer, McDonald, Daniel, Dietrich, David, Ramadhar, Timothy R., Lekbua, Asama, Mroue, Nader, Liston, Conor, Stewart, Eric J., Dubin, Marc J., Zengler, Karsten, Knight, Rob, Gilbert, Jack A., Clardy, Jon, Lewis, Kim

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Can auxiliary indicators improve COVID-19 forecasting and hotspot prediction? von McDonald, Daniel J., Bien, Jacob, Green, Alden, Hu, Addison J., DeFries, Nat, Hyun, Sangwon, Oliveira, Natalia L., Sharpnack, James, Tang, Jingjing, Tibshirani, Robert, Ventura, Valérie, Wasserman, Larry, Tibshirani, Ryan J.

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