High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence von Hyten, David L, Cannon, Steven B, Song, Qijian, Weeks, Nathan, Fickus, Edward W, Shoemaker, Randy C, Specht, James E, Farmer, Andrew D, May, Gregory D, Cregan, Perry B

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Genotyping-by-Sequencing in Plants von Deschamps, Stéphane, Llaca, Victor, May, Gregory D

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Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula von Stanton-Geddes, John, Paape, Timothy, Epstein, Brendan, Briskine, Roman, Yoder, Jeremy, Mudge, Joann, Bharti, Arvind K, Farmer, Andrew D, Zhou, Peng, Denny, Roxanne, May, Gregory D, Erlandson, Stephanie, Yakub, Mohammed, Sugawara, Masayuki, Sadowsky, Michael J, Young, Nevin D, Tiffin, Peter

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Genome sequence of the palaeopolyploid soybean von Schmutz, Jeremy, Cannon, Steven B, Schlueter, Jessica, Ma, Jianxin, Mitros, Therese, Nelson, William, Hyten, David L, Song, Qijian, Thelen, Jay J, Cheng, Jianlin, Xu, Dong, Hellsten, Uffe, Peto, Myron, Grant, David, Cregan, Perry, Shoemaker, Randy C

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Plant Genome Editing and the Relevance of Off-Target Changes von Graham, Nathaniel, Patil, Gunvant B, Bubeck, David M, Dobert, Raymond C, Glenn, Kevin C, Gutsche, Annie T, Kumar, Sandeep, Lindbo, John A, Maas, Luis, May, Gregory D, Vega-Sanchez, Miguel E, Stupar, Robert M, Morrell, Peter L

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Cloning and characterization of a norbelladine 4'-O-methyltransferase involved in the biosynthesis of the Alzheimer's drug galanthamine in Narcissus sp. aff. pseudonarcissus von Kilgore, Matthew B, Augustin, Megan M, Starks, Courtney M, O'Neil-Johnson, Mark, May, Gregory D, Crow, John A, Kutchan, Toni M

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RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome von Severin, Andrew J, Woody, Jenna L, Bolon, Yung-Tsi, Joseph, Bindu, Diers, Brian W, Farmer, Andrew D, Muehlbauer, Gary J, Nelson, Rex T, Grant, David, Specht, James E, Graham, Michelle A, Cannon, Steven B, May, Gregory D, Vance, Carroll P, Shoemaker, Randy C

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Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula von Branca, Antoine, Paape, Timothy D, Zhou, Peng, Briskine, Roman, Farmer, Andrew D, Mudge, Joann, Bharti, Arvind K, Woodward, Jimmy E, May, Gregory D, Gentzbittel, Laurent, Ben, Cécile, Denny, Roxanne, Sadowsky, Michael J, Ronfort, Joëlle, Bataillon, Thomas, Young, Nevin D, Tiffin, Peter

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Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies von Sugawara, Masayuki, Epstein, Brendan, Badgley, Brian D, Unno, Tatsuya, Xu, Lei, Reese, Jennifer, Gyaneshwar, Prasad, Denny, Roxanne, Mudge, Joann, Bharti, Arvind K, Farmer, Andrew D, May, Gregory D, Woodward, Jimmy E, Médigue, Claudine, Vallenet, David, Lajus, Aurélie, Rouy, Zoé, Martinez-Vaz, Betsy, Tiffin, Peter, Young, Nevin D, Sadowsky, Michael J

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Next Generation Sequencing in Predicting Gene Function in Podophyllotoxin Biosynthesis von Marques, Joaquim V., Kim, Kye-Won, Lee, Choonseok, Costa, Michael A., May, Gregory D., Crow, John A., Davin, Laurence B., Lewis, Norman G.

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Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa von Hiremath, Pavana J., Farmer, Andrew, Cannon, Steven B., Woodward, Jimmy, Kudapa, Himabindu, Tuteja, Reetu, Kumar, Ashish, BhanuPrakash, Amindala, Mulaosmanovic, Benjamin, Gujaria, Neha, Krishnamurthy, Laxmanan, Gaur, Pooran M., KaviKishor, Polavarapu B., Shah, Trushar, Srinivasan, Ramamurthy, Lohse, Marc, Xiao, Yongli, Town, Christopher D., Cook, Douglas R., May, Gregory D., Varshney, Rajeev K.

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Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes von Chen, Changbin, Farmer, Andrew D, Langley, Raymond J, Mudge, Joann, Crow, John A, May, Gregory D, Huntley, James, Smith, Alan G, Retzel, Ernest F

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Chromatin loop anchors contain core structural components of the gene expression machinery in maize von Deschamps, Stéphane, Crow, John A, Chaidir, Nadia, Peterson-Burch, Brooke, Kumar, Sunil, Lin, Haining, Zastrow-Hayes, Gina, May, Gregory D

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Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology von Cheung, Foo, Haas, Brian J, Goldberg, Susanne M D, May, Gregory D, Xiao, Yongli, Town, Christopher D

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CYP96T1 of Narcissus sp. aff. pseudonarcissus Catalyzes Formation of the Para-Para' C-C Phenol Couple in the Amaryllidaceae Alkaloids von Kilgore, Matthew B, Augustin, Megan M, May, Gregory D, Crow, John A, Kutchan, Toni M

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A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species von Ilut, Daniel C., Coate, Jeremy E., Luciano, Amelia K., Owens, Thomas G., May, Gregory D., Farmer, Andrew, Doyle, Jeff J.

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Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.) von Bohra, Abhishek, Dubey, Anuja, Saxena, Rachit K, Penmetsa, R. Varma, Poornima, K.N, Kumar, Naresh, Farmer, Andrew D, Srivani, Gudipati, Upadhyaya, Hari D, Gothalwal, Ragini, Ramesh, S, Singh, Dhiraj, Saxena, Kulbhushan, Kishor, P.B. Kavi, Singh, Nagendra K, Town, Christopher D

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Small RNA profiles in soybean primary root tips under water deficit von Zheng, Yun, Hivrale, Vandana, Zhang, Xiaotuo, Valliyodan, Babu, Lelandais-Brière, Christine, Farmer, Andrew D, May, Gregory D, Crespi, Martin, Nguyen, Henry T, Sunkar, Ramanjulu

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Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism von Broeckling, Corey D., Huhman, David V., Farag, Mohamed A., Smith, Joel T., May, Gregory D., Mendes, Pedro, Dixon, Richard A., Sumner, Lloyd W.

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Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping von Buggs, Richard J.A, Chamala, Srikar, Wu, Wei, Gao, Lu, May, Gregory D, Schnable, Patrick S, Soltis, Douglas E, Soltis, Pamela S, Barbazuk, W. Brad

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