pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree von Matsen, Frederick A, Kodner, Robin B, Armbrust, E Virginia

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Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation von Ralph, Duncan K, Matsen, 4th, Frederick A

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Inference of B cell clonal families using heavy/light chain pairing information von Ralph, Duncan K, Matsen, 4th, Frederick A

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PhyloSift: phylogenetic analysis of genomes and metagenomes von Darling, Aaron E, Jospin, Guillaume, Lowe, Eric, Matsen, 4th, Frederick A, Bik, Holly M, Eisen, Jonathan A

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Per-sample immunoglobulin germline inference from B cell receptor deep sequencing data von Ralph, Duncan K, Matsen, 4th, Frederick A

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Dynamics of HIV DNA reservoir seeding in a cohort of superinfected Kenyan women von Pankau, Mark D, Reeves, Daniel B, Harkins, Elias, Ronen, Keshet, Jaoko, Walter, Mandaliya, Kishor, Graham, Susan M, McClelland, R Scott, Matsen Iv, Frederick A, Schiffer, Joshua T, Overbaugh, Julie, Lehman, Dara A

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Likelihood-Based Inference of B Cell Clonal Families von Ralph, Duncan K, Matsen, 4th, Frederick A

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Minimum 10-year Follow-up of Anatomic Total Shoulder Arthroplasty and Ream-and-Run Arthroplasty for Primary Glenohumeral Osteoarthritis von Sharareh, Behnam, Whitson, Anastasia J., Matsen, Frederick A., Hsu, Jason E.

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Rotator Cuff Repair: Published Evidence on Factors Associated With Repair Integrity and Clinical Outcome von McElvany, Matthew D., McGoldrick, Erik, Gee, Albert O., Neradilek, Moni Blazej, Matsen, Frederick A.

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Edge principal components and squash clustering: using the special structure of phylogenetic placement data for sample comparison von Matsen, 4th, Frederick A, Evans, Steven N

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Using B cell receptor lineage structures to predict affinity von Ralph, Duncan K, Matsen, 4th, Frederick A

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Propionibacterium Persists in the Skin Despite Standard Surgical Preparation von Lee, Michael J, Pottinger, Paul S, Butler-Wu, Susan, Bumgarner, Roger E, Russ, Stacy M, Matsen, Frederick A

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Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria von Srinivasan, Sujatha, Hoffman, Noah G, Morgan, Martin T, Matsen, Frederick A, Fiedler, Tina L, Hall, Robert W, Ross, Frederick J, McCoy, Connor O, Bumgarner, Roger, Marrazzo, Jeanne M, Fredricks, David N

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Quantifying MCMC Exploration of Phylogenetic Tree Space von Whidden, Chris, Matsen, Frederick A.

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Letter to the Editor: Clinical Faceoff: How Will Recent Price Transparency Policies Impact Orthopaedic Surgery and its Patients? von Matsen, Frederick A.

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What is the optimal management of a loose glenoid component after anatomic total shoulder arthroplasty: a systematic review von Sharareh, Behnam, Yao, Jie J., Matsen, Frederick A., Hsu, Jason E.

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Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity von DeWitt, 3rd, William S, Smith, Anajane, Schoch, Gary, Hansen, John A, Matsen, 4th, Frederick A, Bradley, Philip

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Charles Rockwood was the Abe Lincoln of Orthopaedics von Matsen, Frederick A.

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The Ability of Primate Lentiviruses to Degrade the Monocyte Restriction Factor SAMHD1 Preceded the Birth of the Viral Accessory Protein Vpx von Lim, Efrem S., Fregoso, Oliver I., McCoy, Connor O., Matsen, Frederick A., Malik, Harmit S., Emerman, Michael

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Using viral sequence diversity to estimate time of HIV infection in infants von Russell, Magdalena L, Fish, Carolyn S, Drescher, Sara, Cassidy, Noah A J, Chanana, Pritha, Benki-Nugent, Sarah, Slyker, Jennifer, Mbori-Ngacha, Dorothy, Bosire, Rose, Richardson, Barbra, Wamalwa, Dalton, Maleche-Obimbo, Elizabeth, Overbaugh, Julie, John-Stewart, Grace, Matsen, 4th, Frederick A, Lehman, Dara A

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