Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of... von Thomsen, Martin Christen Frølund, Nielsen, Morten

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A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance von Thomsen, Martin Christen Frølund, Ahrenfeldt, Johanne, Cisneros, Jose Luis Bellod, Jurtz, Vanessa, Larsen, Mette Voldby, Hasman, Henrik, Aarestrup, Frank Møller, Lund, Ole

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Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles von Roer, Louise, Tchesnokova, Veronika, Allesøe, Rosa, Muradova, Mariya, Chattopadhyay, Sujay, Ahrenfeldt, Johanne, Thomsen, Martin C F, Lund, Ole, Hansen, Frank, Hammerum, Anette M, Sokurenko, Evgeni, Hasman, Henrik

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Characteristics and predictors of hospitalization and death in the first 11 122 cases with a positive RT-PCR test for SARS-CoV-2 in Denmark: a nationwide cohort von Reilev, Mette, Kristensen, Kasper Bruun, Pottegård, Anton, Lund, Lars Christian, Hallas, Jesper, Ernst, Martin Thomsen, Christiansen, Christian Fynbo, Sørensen, Henrik Toft, Johansen, Nanna Borup, Brun, Nikolai Constantin, Voldstedlund, Marianne, Støvring, Henrik, Thomsen, Marianne Kragh, Christensen, Steffen, Gubbels, Sophie, Krause, Tyra Grove, Mølbak, Kåre, Thomsen, Reimar Wernich

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The double-edge sword of CRISPR application for in vivo studies von Thomsen, Martin K.

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STING agonists enable antiviral cross-talk between human cells and confer protection against genital herpes in mice von Skouboe, Morten K, Knudsen, Alice, Reinert, Line S, Boularan, Cedric, Lioux, Thierry, Perouzel, Eric, Thomsen, Martin K, Paludan, Søren R

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Pre-Clinical Models to Study Human Prostate Cancer von Thomsen, Martin K., Busk, Morten

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Sensing of HSV-1 by the cGAS–STING pathway in microglia orchestrates antiviral defence in the CNS von Reinert, Line S., Lopušná, Katarína, Winther, Henriette, Sun, Chenglong, Thomsen, Martin K., Nandakumar, Ramya, Mogensen, Trine H., Meyer, Morten, Vægter, Christian, Nyengaard, Jens R., Fitzgerald, Katherine A., Paludan, Søren R.

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Engineered lentivirus-derived nanoparticles (LVNPs) for delivery of CRISPR/Cas ribonucleoprotein complexes supporting base editing, prime editing and in vivo gene modification von Haldrup, Jakob, Andersen, Sofie, Labial, Alexander Rafael LaVilla, Wolff, Jonas Holst, Frandsen, Frederik Plum, Skov, Thomas Wisbech, Rovsing, Anne Bruun, Nielsen, Ian, Jakobsen, Thomas Stax, Askou, Anne Louise, Thomsen, Martin K, Corydon, Thomas J, Thomsen, Emil Aagaard, Mikkelsen, Jacob Giehm

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The cGAS-STING pathway is a therapeutic target in a preclinical model of hepatocellular carcinoma von Thomsen, Martin K., Skouboe, Morten K., Boularan, Cedric, Vernejoul, Fabienne, Lioux, Thierry, Leknes, Siv L., Berthelsen, Martin F., Riedel, Maria, Cai, Huiqiang, Joseph, Justin V., Perouzel, Eric, Tiraby, Michele, Vendelbo, Mikkel H., Paludan, Søren R.

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Lack of immunological DNA sensing in hepatocytes facilitates hepatitis B virus infection von Thomsen, Martin K., Nandakumar, Ramya, Stadler, Daniela, Malo, Antje, Valls, Roser Marin, Wang, Fan, Reinert, Line S., Dagnæs‐Hansen, Frederik, Hollensen, Anne Kruse, Mikkelsen, Jacob Giehm, Protzer, Ulrike, Paludan, Søren R.

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Application of CRISPR for In Vivo Mouse Cancer Studies von Thomsen, Martin K.

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CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli Based on the fumC and fimH Alleles von Roer, Louise, Johannesen, Thor Bech, Hansen, Frank, Stegger, Marc, Tchesnokova, Veronika, Sokurenko, Evgeni, Garibay, Natasha, Allesøe, Rosa, Thomsen, Martin C F, Lund, Ole, Hasman, Henrik, Hammerum, Anette M

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Regulation of Steatohepatitis and PPARγ Signaling by Distinct AP-1 Dimers von Hasenfuss, Sebastian C., Bakiri, Latifa, Thomsen, Martin K., Williams, Evan G., Auwerx, Johan, Wagner, Erwin F.

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Influenza A virus targets a cGAS-independent STING pathway that controls enveloped RNA viruses von Holm, Christian K., Rahbek, Stine H., Gad, Hans Henrik, Bak, Rasmus O., Jakobsen, Martin R., Jiang, Zhaozaho, Hansen, Anne Louise, Jensen, Simon K., Sun, Chenglong, Thomsen, Martin K., Laustsen, Anders, Nielsen, Camilla G., Severinsen, Kasper, Xiong, Yingluo, Burdette, Dara L., Hornung, Veit, Lebbink, Robert Jan, Duch, Mogens, Fitzgerald, Katherine A., Bahrami, Shervin, Mikkelsen, Jakob Giehm, Hartmann, Rune, Paludan, Søren R.

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Three-dimensional culture models to study glioblastoma — current trends and future perspectives von Joseph, Justin V., Blaavand, Mathilde S., Daubon, Thomas, Kruyt, Frank AE, Thomsen, Martin K.

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CRISPR/Cas9 model of prostate cancer identifies Kmt2c deficiency as a metastatic driver by Odam/Cabs1 gene cluster expression von Cai, Huiqiang, Zhang, Bin, Ahrenfeldt, Johanne, Joseph, Justin V., Riedel, Maria, Gao, Zongliang, Thomsen, Sofie K., Christensen, Ditte S., Bak, Rasmus O., Hager, Henrik, Vendelbo, Mikkel H., Gao, Xin, Birkbak, Nicolai, Thomsen, Martin K.

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A truncated reverse transcriptase enhances prime editing by split AAV vectors von Gao, Zongliang, Ravendran, Sujan, Mikkelsen, Nanna S., Haldrup, Jakob, Cai, Huiqiang, Ding, Xiangning, Paludan, Søren R., Thomsen, Martin K., Mikkelsen, Jacob Giehm, Bak, Rasmus O.

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MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads von Petersen, Thomas Nordahl, Lukjancenko, Oksana, Thomsen, Martin Christen Frølund, Maddalena Sperotto, Maria, Lund, Ole, Møller Aarestrup, Frank, Sicheritz-Pontén, Thomas

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Long‐term oral budesonide treatment and risk of osteoporotic fractures in patients with microscopic colitis von Reilev, Mette, Hallas, Jesper, Thomsen Ernst, Martin, Nielsen, Gunnar Lauge, Bonderup, Ole K.

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