The RNA modification landscape in human disease von Jonkhout, Nicky, Tran, Julia, Smith, Martin A, Schonrock, Nicole, Mattick, John S, Novoa, Eva Maria

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Human Mitochondrial Transcriptome von Mercer, Tim R, Neph, Shane, Dinger, Marcel E, Crawford, Joanna, Smith, Martin A, Shearwood, Anne-Marie J, Haugen, Eric, Bracken, Cameron P, Rackham, Oliver, Stamatoyannopoulos, John A, Filipovska, Aleksandra, Mattick, John S

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High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes von Singh, Mandeep, Al-Eryani, Ghamdan, Carswell, Shaun, Ferguson, James M., Blackburn, James, Barton, Kirston, Roden, Daniel, Luciani, Fabio, Giang Phan, Tri, Junankar, Simon, Jackson, Katherine, Goodnow, Christopher C., Smith, Martin A., Swarbrick, Alexander

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RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure von Lu, Zhipeng, Zhang, Qiangfeng Cliff, Lee, Byron, Flynn, Ryan A., Smith, Martin A., Robinson, James T., Davidovich, Chen, Gooding, Anne R., Goodrich, Karen J., Mattick, John S., Mesirov, Jill P., Cech, Thomas R., Chang, Howard Y.

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GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis von Gamaarachchi, Hasindu, Lam, Chun Wai, Jayatilaka, Gihan, Samarakoon, Hiruna, Simpson, Jared T., Smith, Martin A., Parameswaran, Sri

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The Melanoma-Upregulated Long Noncoding RNA SPRY4-IT1 Modulates Apoptosis and Invasion von KHAITAN, Divya, DINGER, Marcel E, MAZAR, Joseph, CRAWFORD, Joanna, SMITH, Martin A, MATTICK, John S, PERERA, Ranjan J

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Novel applications of Convolutional Neural Networks in the age of Transformers von Ersavas, Tansel, Smith, Martin A., Mattick, John S.

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Unexpected host dependency of Antarctic Nanohaloarchaeota von Hamm, Joshua N., Erdmann, Susanne, Eloe-Fadrosh, Emiley A., Angeloni, Allegra, Zhong, Ling, Brownlee, Christopher, Williams, Timothy J., Barton, Kirston, Carswell, Shaun, Smith, Martin A., Brazendale, Sarah, Hancock, Alyce M., Allen, Michelle A., Raftery, Mark J., Cavicchioli, Ricardo

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Evolutionary divergent clusters of transcribed extinct truncated retroposons drive low mRNA expression and developmental regulation in the protozoan Leishmania von Ferreira, Gabriel Reis, Emond-Rheault, Jean-Guillaume, Alves, Lysangela, Leprohon, Philippe, Smith, Martin A, Papadopoulou, Barbara

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Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis von Hardwick, Simon A., Chen, Wendy Y., Wong, Ted, Kanakamedala, Bindu S., Deveson, Ira W., Ongley, Sarah E., Santini, Nadia S., Marcellin, Esteban, Smith, Martin A., Nielsen, Lars K., Lovelock, Catherine E., Neilan, Brett A., Mercer, Tim R.

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Exploring psychosocial predictors of STI testing in University students von Martin-Smith, H A, Okpo, E A, Bull, E R

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Adaptation of Oxford Nanopore technology for hepatitis C whole genome sequencing and identification of within-host viral variants von Riaz, Nasir, Leung, Preston, Barton, Kirston, Smith, Martin A., Carswell, Shaun, Bull, Rowena, Lloyd, Andrew R., Rodrigo, Chaturaka

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Comparisons of dual isogenic human iPSC pairs identify functional alterations directly caused by an epilepsy associated SCN1A mutation von Xie, Yunyao, Ng, Nathan N., Safrina, Olga S., Ramos, Carmen M., Ess, Kevin C., Schwartz, Philip H., Smith, Martin A., O'Dowd, Diane K.

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SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer von Askarian-Amiri, Marjan E, Crawford, Joanna, French, Juliet D, Smart, Chanel E, Smith, Martin A, Clark, Michael B, Ru, Kelin, Mercer, Tim R, Thompson, Ella R, Lakhani, Sunil R, Vargas, Ana C, Campbell, Ian G, Brown, Melissa A, Dinger, Marcel E, Mattick, John S

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DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity von Du, Qian, Smith, Grady C., Luu, Phuc Loi, Ferguson, James M., Armstrong, Nicola J., Caldon, C. Elizabeth, Campbell, Elyssa M., Nair, Shalima S., Zotenko, Elena, Gould, Cathryn M., Buckley, Michael, Chia, Kee-Ming, Portman, Neil, Lim, Elgene, Kaczorowski, Dominik, Chan, Chia-Ling, Barton, Kirston, Deveson, Ira W., Smith, Martin A., Powell, Joseph E., Skvortsova, Ksenia, Stirzaker, Clare, Achinger-Kawecka, Joanna, Clark, Susan J.

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DotAligner: identification and clustering of RNA structure motifs von Smith, Martin A, Seemann, Stefan E, Quek, Xiu Cheng, Mattick, John S

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Patient health records and whole viral genomes from an early SARS-CoV-2 outbreak in a Quebec hospital reveal features associated with favorable outcomes von Pare, Bastien, Rozendaal, Marieke, Morin, Sacha, Kaufmann, Lea, Simpson, Shawn M., Poujol, Raphael, Mostefai, Fatima, Grenier, Jean-Christophe, Xing, Henry, Sanchez, Miguelle, Yechouron, Ariane, Racette, Ronald, Hussin, Julie G., Wolf, Guy, Pavlov, Ivan, Smith, Martin A.

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A Behavioral Screen for Heat-Induced Seizures in Mouse Models of Epilepsy von Das, Antara, Smith, Martin A., O'Dowd, Diane K.

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iPSCs derived from esophageal atresia patients reveal SOX2 dysregulation at the anterior foregut stage von Raad, Suleen, David, Anu, Sagniez, Melanie, Paré, Bastien, Orfi, Zakaria, Dumont, Nicolas A, Smith, Martin A, Faure, Christophe

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Chiral DNA sequences as commutable controls for clinical genomics von Deveson, Ira W., Madala, Bindu Swapna, Blackburn, James, Barker, Chris, Wong, Ted, Barton, Kirston M., Smith, Martin A., Watkins, D. Neil, Mercer, Tim R.

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