All biology is computational biology von Markowetz, Florian

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All models are wrong and yours are useless: making clinical prediction models impactful for patients von Markowetz, Florian

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Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data von Ching, Travers, Zhu, Xun, Garmire, Lana X

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Inferring cellular networks--a review von Markowetz, Florian, Spang, Rainer

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Reproducibility standards for machine learning in the life sciences von Heil, Benjamin J., Hoffman, Michael M., Markowetz, Florian, Lee, Su-In, Greene, Casey S., Hicks, Stephanie C.

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How to understand the cell by breaking it: network analysis of gene perturbation screens von Markowetz, Florian

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Cancer Evolution: Mathematical Models and Computational Inference von Beerenwinkel, Niko, Schwarz, Roland F., Gerstung, Moritz, Markowetz, Florian

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You Are Not Working for Me; I Am Working with You von Markowetz, Florian

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Patterns of Immune Infiltration in Breast Cancer and Their Clinical Implications: A Gene-Expression-Based Retrospective Study von Ali, H Raza, Chlon, Leon, Pharoah, Paul D P, Markowetz, Florian, Caldas, Carlos

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Multi-omic machine learning predictor of breast cancer therapy response von Sammut, Stephen-John, Crispin-Ortuzar, Mireia, Chin, Suet-Feung, Provenzano, Elena, Bardwell, Helen A., Ma, Wenxin, Cope, Wei, Dariush, Ali, Dawson, Sarah-Jane, Abraham, Jean E., Dunn, Janet, Hiller, Louise, Thomas, Jeremy, Cameron, David A., Bartlett, John M. S., Hayward, Larry, Pharoah, Paul D., Markowetz, Florian, Rueda, Oscar M., Earl, Helena M., Caldas, Carlos

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Practical and Robust Identification of Molecular Subtypes in Colorectal Cancer by Immunohistochemistry von Trinh, Anne, Trumpi, Kari, De Sousa E Melo, Felipe, Wang, Xin, de Jong, Joan H, Fessler, Evelyn, Kuppen, Peter J K, Reimers, Marlies S, Swets, Marloes, Koopman, Miriam, Nagtegaal, Iris D, Jansen, Marnix, Hooijer, Gerrit K J, Offerhaus, George J A, Kranenburg, Onno, Punt, Cornelis J, Medema, Jan Paul, Markowetz, Florian, Vermeulen, Louis

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Poor-prognosis colon cancer is defined by a molecularly distinct subtype and develops from serrated precursor lesions von De Sousa E Melo, Felipe, Wang, Xin, Jansen, Marnix, Fessler, Evelyn, Trinh, Anne, de Rooij, Laura P M H, de Jong, Joan H, de Boer, Onno J, van Leersum, Ronald, Bijlsma, Maarten F, Rodermond, Hans, van der Heijden, Maartje, van Noesel, Carel J M, Tuynman, Jurriaan B, Dekker, Evelien, Markowetz, Florian, Medema, Jan Paul, Vermeulen, Louis

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Estimating the predictability of cancer evolution von Hosseini, Sayed-Rzgar, Diaz-Uriarte, Ramon, Markowetz, Florian, Beerenwinkel, Niko

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Perturbation biology: inferring signaling networks in cellular systems von Molinelli, Evan J, Korkut, Anil, Wang, Weiqing, Miller, Martin L, Gauthier, Nicholas P, Jing, Xiaohong, Kaushik, Poorvi, He, Qin, Mills, Gordon, Solit, David B, Pratilas, Christine A, Weigt, Martin, Braunstein, Alfredo, Pagnani, Andrea, Zecchina, Riccardo, Sander, Chris

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Spatial and temporal heterogeneity in high-grade serous ovarian cancer: a phylogenetic analysis von Schwarz, Roland F, Ng, Charlotte K Y, Cooke, Susanna L, Newman, Scott, Temple, Jillian, Piskorz, Anna M, Gale, Davina, Sayal, Karen, Murtaza, Muhammed, Baldwin, Peter J, Rosenfeld, Nitzan, Earl, Helena M, Sala, Evis, Jimenez-Linan, Mercedes, Parkinson, Christine A, Markowetz, Florian, Brenton, James D

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SuperFreq: Integrated mutation detection and clonal tracking in cancer von Flensburg, Christoffer, Sargeant, Tobias, Oshlack, Alicia, Majewski, Ian J

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SANTA: quantifying the functional content of molecular networks von Cornish, Alex J, Markowetz, Florian

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Phylogenetic quantification of intra-tumour heterogeneity von Schwarz, Roland F, Trinh, Anne, Sipos, Botond, Brenton, James D, Goldman, Nick, Markowetz, Florian

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Regulators of genetic risk of breast cancer identified by integrative network analysis von Castro, Mauro A A, de Santiago, Ines, Campbell, Thomas M, Vaughn, Courtney, Hickey, Theresa E, Ross, Edith, Tilley, Wayne D, Markowetz, Florian, Ponder, Bruce A J, Meyer, Kerstin B

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Five selfish reasons to work reproducibly von Markowetz, Florian

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