The microglial sensome revealed by direct RNA sequencing von Hickman, Suzanne E, Kingery, Nathan D, Ohsumi, Toshiro K, Borowsky, Mark L, Wang, Li-chong, Means, Terry K, El Khoury, Joseph

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Genome-wide Chromatin Interactions of the Nanog Locus in Pluripotency, Differentiation, and Reprogramming von Apostolou, Effie, Ferrari, Francesco, Walsh, Ryan M., Bar-Nur, Ori, Stadtfeld, Matthias, Cheloufi, Sihem, Stuart, Hannah T., Polo, Jose M., Ohsumi, Toshiro K., Borowsky, Mark L., Kharchenko, Peter V., Park, Peter J., Hochedlinger, Konrad

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genomic binding sites of a noncoding RNA von Simon, Matthew D, Wang, Charlotte I, Kharchenko, Peter V, West, Jason A, Chapman, Brad A, Alekseyenko, Artyom A, Borowsky, Mark L, Kuroda, Mitzi I, Kingston, Robert E

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Sequencing Chromosomal Abnormalities Reveals Neurodevelopmental Loci that Confer Risk across Diagnostic Boundaries von Talkowski, Michael E., Rosenfeld, Jill A., Blumenthal, Ian, Pillalamarri, Vamsee, Chiang, Colby, Heilbut, Adrian, Ernst, Carl, Hanscom, Carrie, Rossin, Elizabeth, Lindgren, Amelia M., Pereira, Shahrin, Ruderfer, Douglas, Kirby, Andrew, Ripke, Stephan, Harris, David J., Lee, Ji-Hyun, Ha, Kyungsoo, Kim, Hyung-Goo, Solomon, Benjamin D., Gropman, Andrea L., Lucente, Diane, Sims, Katherine, Ohsumi, Toshiro K., Borowsky, Mark L., Loranger, Stephanie, Quade, Bradley, Lage, Kasper, Miles, Judith, Wu, Bai-Lin, Shen, Yiping, Neale, Benjamin, Shaffer, Lisa G., Daly, Mark J., Morton, Cynthia C., Gusella, James F.

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Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and transgenic integration von Chiang, Colby, Jacobsen, Jessie C, Ernst, Carl, Hanscom, Carrie, Heilbut, Adrian, Blumenthal, Ian, Mills, Ryan E, Kirby, Andrew, Lindgren, Amelia M, Rudiger, Skye R, McLaughlan, Clive J, Bawden, C Simon, Reid, Suzanne J, Faull, Richard L M, Snell, Russell G, Hall, Ira M, Shen, Yiping, Ohsumi, Toshiro K, Borowsky, Mark L, Daly, Mark J, Lee, Charles, Morton, Cynthia C, MacDonald, Marcy E, Gusella, James F, Talkowski, Michael E

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Ten simple rules to power drug discovery with data science von Ferrero, Enrico, Brachat, Sophie, Jenkins, Jeremy L., Marc, Philippe, Skewes-Cox, Peter, Altshuler, Robert C., Gubser Keller, Caroline, Kauffmann, Audrey, Sassaman, Erik K., Laramie, Jason M., Schoeberl, Birgit, Borowsky, Mark L., Stiefl, Nikolaus

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Short-term genome evolution of Listeria monocytogenes in a non-controlled environment von Orsi, Renato H, Borowsky, Mark L, Lauer, Peter, Young, Sarah K, Nusbaum, Chad, Galagan, James E, Birren, Bruce W, Ivy, Reid A, Sun, Qi, Graves, Lewis M, Swaminathan, Bala, Wiedmann, Martin

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RNA signatures allow rapid identification of pathogens and antibiotic susceptibilities von Barczak, Amy K, Gomez, James E, Kaufmann, Benjamin B, Hinson, Ella R, Cosimi, Lisa, Borowsky, Mark L, Onderdonk, Andrew B, Stanley, Sarah A, Kaur, Devinder, Bryant, Kevin F, Knipe, David M, Sloutsky, Alexander, Hung, Deborah T

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Histone H3R2 Symmetric Dimethylation and Histone H3K4 Trimethylation Are Tightly Correlated in Eukaryotic Genomes von Yuan, Chih-Chi, Matthews, Adam G.W., Jin, Yi, Chen, Chang Feng, Chapman, Brad A., Ohsumi, Toshiro K., Glass, Karen C., Kutateladze, Tatiana G., Borowsky, Mark L., Struhl, Kevin, Oettinger, Marjorie A.

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Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis von Farhat, Maha R, Shapiro, B Jesse, Kieser, Karen J, Sultana, Razvan, Jacobson, Karen R, Victor, Thomas C, Warren, Robin M, Streicher, Elizabeth M, Calver, Alistair, Sloutsky, Alex, Kaur, Devinder, Posey, Jamie E, Plikaytis, Bonnie, Oggioni, Marco R, Gardy, Jennifer L, Johnston, James C, Rodrigues, Mabel, Tang, Patrick K C, Kato-Maeda, Midori, Borowsky, Mark L, Muddukrishna, Bhavana, Kreiswirth, Barry N, Kurepina, Natalia, Galagan, James, Gagneux, Sebastien, Birren, Bruce, Rubin, Eric J, Lander, Eric S, Sabeti, Pardis C, Murray, Megan

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Atypical case of Wolfram syndrome revealed through targeted exome sequencing in a patient with suspected mitochondrial disease von Lieber, Daniel S, Vafai, Scott B, Horton, Laura C, Slate, Nancy G, Liu, Shangtao, Borowsky, Mark L, Calvo, Sarah E, Schmahmann, Jeremy D, Mootha, Vamsi K

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Targeted exome sequencing of suspected mitochondrial disorders von Lieber, Daniel S, Calvo, Sarah E, Shanahan, Kristy, Slate, Nancy G, Liu, Shangtao, Hershman, Steven G, Gold, Nina B, Chapman, Brad A, Thorburn, David R, Berry, Gerard T, Schmahmann, Jeremy D, Borowsky, Mark L, Mueller, David M, Sims, Katherine B, Mootha, Vamsi K

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Multiplexed Illumina sequencing libraries from picogram quantities of DNA von Bowman, Sarah K, Simon, Matthew D, Deaton, Aimee M, Tolstorukov, Michael, Borowsky, Mark L, Kingston, Robert E

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CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development von Ray, Mridula K., Wiskow, Ole, King, Matthew J., Ismail, Nidha, Ergun, Ayla, Wang, Yanqun, Plys, Aaron J., Davis, Christopher P., Kathrein, Katie, Sadreyev, Ruslan, Borowsky, Mark L., Eggan, Kevin, Zon, Leonard, Galloway, Jenna L., Kingston, Robert E.

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Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination von Pulivarthy, Sandhya R., Lion, Mattia, Kuzu, Guray, Matthews, Adam G. W., Borowsky, Mark L., Morris, John, Kingston, Robert E., Dennis, Jonathan H., Tolstorukov, Michael Y., Oettinger, Marjorie A.

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MolBioLib: a C++11 framework for rapid development and deployment of bioinformatics tasks von OHSUMI, Toshiro K, BOROWSKY, Mark L

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The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed von Sexton, Brittany S, Avey, Denis, Druliner, Brooke R, Fincher, Justin A, Vera, Daniel L, Grau, Daniel J, Borowsky, Mark L, Gupta, Shobhit, Girimurugan, Senthil B, Chicken, Eric, Zhang, Jinfeng, Noble, William S, Zhu, Fanxiu, Kingston, Robert E, Dennis, Jonathan H

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Analysis of the DNA sequence and duplication history of human chromosome 15 von Zody, Michael C, Nusbaum, Chad, Garber, Manuel, Sharpe, Ted, Young, Sarah K, Rowen, Lee, O'Neill, Keith, Whittaker, Charles A, Kamal, Michael, Chang, Jean L, Cuomo, Christina A, Dewar, Ken, FitzGerald, Michael G, Kodira, Chinnappa D, Madan, Anup, Qin, Shizhen, Yang, Xiaoping, Abbasi, Nissa, Abouelleil, Amr, Arachchi, Harindra M, Baradarani, Lida, Birditt, Brian, Bloom, Scott, Bloom, Toby, Borowsky, Mark L, Burke, Jeremy, Butler, Jonathan, Cook, April, DeArellano, Kurt, DeCaprio, David, Dorris, Lester, Dors, Monica, Eichler, Evan E, Engels, Reinhard, Fahey, Jessica, Fleetwood, Peter, Friedman, Cynthia, Gearin, Gary, Hall, Jennifer L, Hensley, Grace, Johnson, Ericka, Jones, Charlien, Kamat, Asha, Kaur, Amardeep, Locke, Devin P, Madan, Anuradha, Munson, Glen, Jaffe, David B, Lui, Annie, Macdonald, Pendexter, Mauceli, Evan, Naylor, Jerome W, Nesbitt, Ryan, Nicol, Robert, O'Leary, Sinéad B, Ratcliffe, Amber, Rounsley, Steven, She, Xinwei, Sneddon, Katherine M. B, Stewart, Sandra, Sougnez, Carrie, Stone, Sabrina M, Topham, Kerri, Vincent, Dascena, Wang, Shunguang, Zimmer, Andrew R, Birren, Bruce W, Hood, Leroy, Lander, Eric S

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Layilin, A Novel Talin-Binding Transmembrane Protein Homologous with C-Type Lectins, Is Localized in Membrane Ruffles von Borowsky, Mark L., Hynes, Richard O.

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Posterior stripe expression of hunchback is driven from two promoters by a common enhancer element von Margolis, J S, Borowsky, M L, Steingrímsson, E, Shim, C W, Lengyel, J A, Posakony, J W

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