Genome-wide identification of bacterial plant colonization genes von Cole, Benjamin J, Feltcher, Meghan E, Waters, Robert J, Wetmore, Kelly M, Mucyn, Tatiana S, Ryan, Elizabeth M, Wang, Gaoyan, Ul-Hasan, Sabah, McDonald, Meredith, Yoshikuni, Yasuo, Malmstrom, Rex R, Deutschbauer, Adam M, Dangl, Jeffery L, Visel, Axel

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Whole genome amplification and de novo assembly of single bacterial cells von Rodrigue, Sébastien, Malmstrom, Rex R, Berlin, Aaron M, Birren, Bruce W, Henn, Matthew R, Chisholm, Sallie W

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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea von McCarren, Jay, Becker, Jamie W., Repeta, Daniel J., Shi, Yanmei, Young, Curtis R., Malmstrom, Rex R., Chisholm, Sallie W., DeLong, Edward F.

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Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites von Villalobos-Escobedo, José Manuel, Mercado-Esquivias, Maria Belen, Adams, Catharine, Kauffman, W. Berkeley, Malmstrom, Rex R, Deutschbauer, Adam M, Glass, N. Louise

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Probing the active fraction of soil microbiomes using BONCAT-FACS von Couradeau, Estelle, Sasse, Joelle, Goudeau, Danielle, Nath, Nandita, Hazen, Terry C., Bowen, Ben P., Chakraborty, Romy, Malmstrom, Rex R., Northen, Trent R.

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Hidden diversity of soil giant viruses von Schulz, Frederik, Alteio, Lauren, Goudeau, Danielle, Ryan, Elizabeth M., Yu, Feiqiao B., Malmstrom, Rex R., Blanchard, Jeffrey, Woyke, Tanja

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The Epigenomic Landscape of Prokaryotes von Blow, Matthew J, Clark, Tyson A, Daum, Chris G, Deutschbauer, Adam M, Fomenkov, Alexey, Fries, Roxanne, Froula, Jeff, Kang, Dongwan D, Malmstrom, Rex R, Morgan, Richard D, Posfai, Janos, Singh, Kanwar, Visel, Axel, Wetmore, Kelly, Zhao, Zhiying, Rubin, Edward M, Korlach, Jonas, Pennacchio, Len A, Roberts, Richard J

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Visualizing in situ translational activity for identifying and sorting slow-growing archaeal–bacterial consortia von Hatzenpichler, Roland, Connon, Stephanie A., Goudeau, Danielle, Malmstrom, Rex R., Woyke, Tanja, Orphan, Victoria J.

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Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics von Roux, Simon, Chan, Leong-Keat, Egan, Rob, Malmstrom, Rex R., McMahon, Katherine D., Sullivan, Matthew B.

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Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations von Bendall, Matthew L, Stevens, Sarah LR, Chan, Leong-Keat, Malfatti, Stephanie, Schwientek, Patrick, Tremblay, Julien, Schackwitz, Wendy, Martin, Joel, Pati, Amrita, Bushnell, Brian, Froula, Jeff, Kang, Dongwan, Tringe, Susannah G, Bertilsson, Stefan, Moran, Mary A, Shade, Ashley, Newton, Ryan J, McMahon, Katherine D, Malmstrom, Rex R

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SAR11 bacteria linked to ocean anoxia and nitrogen loss von Tsementzi, Despina, Wu, Jieying, Deutsch, Samuel, Nath, Sangeeta, Rodriguez-R, Luis M., Burns, Andrew S., Ranjan, Piyush, Sarode, Neha, Malmstrom, Rex R., Padilla, Cory C., Stone, Benjamin K., Bristow, Laura A., Larsen, Morten, Glass, Jennifer B., Thamdrup, Bo, Woyke, Tanja, Konstantinidis, Konstantinos T., Stewart, Frank J.

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Multicellular magnetotactic bacteria are genetically heterogeneous consortia with metabolically differentiated cells von Schaible, George A, Jay, Zackary J, Cliff, John, Schulz, Frederik, Gauvin, Colin, Goudeau, Danielle, Malmstrom, Rex R, Ruff, S Emil, Edgcomb, Virginia, Hatzenpichler, Roland

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Unlocking short read sequencing for metagenomics von Rodrigue, Sébastien, Materna, Arne C, Timberlake, Sonia C, Blackburn, Matthew C, Malmstrom, Rex R, Alm, Eric J, Chisholm, Sallie W

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Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea von Murali, Ranjani, Yu, Hang, Speth, Daan R, Wu, Fabai, Metcalfe, Kyle S, Crémière, Antoine, Laso-Pèrez, Rafael, Malmstrom, Rex R, Goudeau, Danielle, Woyke, Tanja, Hatzenpichler, Roland, Chadwick, Grayson L, Connon, Stephanie A, Orphan, Victoria J

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Biogeography of Major Bacterial Groups in the Delaware Estuary von Kirchman, David L., Dittel, Ana I., Malmstrom, Rex R., Cottrell, Matthew T.

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Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface von Probst, Alexander J., Ladd, Bethany, Jarett, Jessica K., Geller-McGrath, David E., Sieber, Christian M. K., Emerson, Joanne B., Anantharaman, Karthik, Thomas, Brian C., Malmstrom, Rex R., Stieglmeier, Michaela, Klingl, Andreas, Woyke, Tanja, Ryan, M. Cathryn, Banfield, Jillian F.

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Quality MAGnified von Malmstrom, Rex R.

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Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage von Boeuf, Dominique, Eppley, John M., Mende, Daniel R., Malmstrom, Rex R., Woyke, Tanja, DeLong, Edward F.

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Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans von Malmstrom, Rex R, Coe, Allison, Kettler, Gregory C, Martiny, Adam C, Frias-Lopez, Jorge, Zinser, Erik R, Chisholm, Sallie W

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Exploring the Roles of DNA Methylation in the Metal-Reducing Bacterium Shewanella oneidensis MR-1 von Bendall, Matthew L, Luong, Khai, Wetmore, Kelly M, Blow, Matthew, Korlach, Jonas, Deutschbauer, Adam, Malmstrom, Rex R

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