Promoter-specific trans activation and repression by human cytomegalovirus immediate-early proteins involves common and unique protein domains von STENBERG, R. M, FORTNEY, J, BARLOW, S. W, MAGRANE, B. P, NELSON, J. A, GHAZAL, P

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The UniProt-GO Annotation database in 2011 von Dimmer, Emily C., Huntley, Rachael P., Alam-Faruque, Yasmin, Sawford, Tony, O'Donovan, Claire, Martin, Maria J., Bely, Benoit, Browne, Paul, Mun Chan, Wei, Eberhardt, Ruth, Gardner, Michael, Laiho, Kati, Legge, Duncan, Magrane, Michele, Pichler, Klemens, Poggioli, Diego, Sehra, Harminder, Auchincloss, Andrea, Axelsen, Kristian, Blatter, Marie-Claude, Boutet, Emmanuel, Braconi-Quintaje, Silvia, Breuza, Lionel, Bridge, Alan, Coudert, Elizabeth, Estreicher, Anne, Famiglietti, Livia, Ferro-Rojas, Serenella, Feuermann, Marc, Gos, Arnaud, Gruaz-Gumowski, Nadine, Hinz, Ursula, Hulo, Chantal, James, Janet, Jimenez, Silvia, Jungo, Florence, Keller, Guillaume, Lemercier, Phillippe, Lieberherr, Damien, Masson, Patrick, Moinat, Madelaine, Pedruzzi, Ivo, Poux, Sylvain, Rivoire, Catherine, Roechert, Bernd, Schneider, Michael, Stutz, Andre, Sundaram, Shyamala, Tognolli, Michael, Bougueleret, Lydie, Argoud-Puy, Ghislaine, Cusin, Isabelle, Duek- Roggli, Paula, Xenarios, Ioannis, Apweiler, Rolf

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The Gene Ontology resource: enriching a GOld mine von Carbon, Seth, Douglass, Eric, Good, Benjamin M, Unni, Deepak R, Harris, Nomi L, Mungall, Christopher J, Basu, Siddartha, Chisholm, Rex L, Dodson, Robert J, Hartline, Eric, Fey, Petra, Thomas, Paul D, Albou, Laurent-Philippe, Ebert, Dustin, Kesling, Michael J, Mi, Huaiyu, Muruganujan, Anushya, Huang, Xiaosong, Mushayahama, Tremayne, LaBonte, Sandra A, Siegele, Deborah A, Antonazzo, Giulia, Attrill, Helen, Brown, Nick H, Garapati, Phani, Marygold, Steven J, Trovisco, Vitor, dos Santos, Gil, Falls, Kathleen, Tabone, Christopher, Zhou, Pinglei, Goodman, Joshua L, Strelets, Victor B, Thurmond, Jim, Garmiri, Penelope, Ishtiaq, Rizwan, Rodríguez-López, Milagros, Acencio, Marcio L, Kuiper, Martin, Lægreid, Astrid, Logie, Colin, Lovering, Ruth C, Kramarz, Barbara, Saverimuttu, Shirin C C, Pinheiro, Sandra M, Gunn, Heather, Su, Renzhi, Thurlow, Katherine E, Chibucos, Marcus, Giglio, Michelle, Nadendla, Suvarna, Munro, James, Jackson, Rebecca, Duesbury, Margaret J, Del-Toro, Noemi, Meldal, Birgit H M, Paneerselvam, Kalpana, Perfetto, Livia, Porras, Pablo, Orchard, Sandra, Shrivastava, Anjali, Chang, Hsin-Yu, Finn, Robert Daniel, Mitchell, Alexander Lawson, Rawlings, Neil David, Richardson, Lorna, Sangrador-Vegas, Amaia, Blake, Judith A, Christie, Karen R, Dolan, Mary E, Drabkin, Harold J, Hill, David P, Ni, Li, Sitnikov, Dmitry M, Harris, Midori A, Oliver, Stephen G, Rutherford, Kim, Wood, Valerie, Hayles, Jaqueline, Bähler, Jürg, Bolton, Elizabeth R, De Pons, Jeffery L, Dwinell, Melinda R, Hayman, G Thomas, Kaldunski, Mary L, Kwitek, Anne E, Laulederkind, Stanley J F, Plasterer, Cody, Tutaj, Marek A, Vedi, Mahima, Wang, Shur-Jen, D’Eustachio, Peter, Matthews, Lisa, Balhoff, James P, Aleksander, Suzi A, Alexander, Michael J, Cherry, J Michael, Engel, Stacia R, Gondwe, Felix, Karra, Kalpana

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Gene Ontology annotations and resources von Blake, J A, Dolan, M, Drabkin, H, Hill, D P, Li, Ni, Sitnikov, D, Bridges, S, Burgess, S, Buza, T, McCarthy, F, Peddinti, D, Pillai, L, Carbon, S, Dietze, H, Ireland, A, Lewis, S E, Mungall, C J, Gaudet, P, Chrisholm, R L, Fey, P, Kibbe, W A, Basu, S, Siegele, D A, McIntosh, B K, Renfro, D P, Zweifel, A E, Hu, J C, Brown, N H, Tweedie, S, Alam-Faruque, Y, Apweiler, R, Auchinchloss, A, Axelsen, K, Bely, B, Blatter, M -C, Bonilla, C, Bouguerleret, L, Boutet, E, Breuza, L, Bridge, A, Chan, W M, Chavali, G, Coudert, E, Dimmer, E, Estreicher, A, Famiglietti, L, Feuermann, M, Gos, A, Gruaz-Gumowski, N, Hieta, R, Hinz, C, Hulo, C, Huntley, R, James, J, Jungo, F, Keller, G, Laiho, K, Legge, D, Lemercier, P, Lieberherr, D, Magrane, M, Martin, M J, Masson, P, Mutowo-Muellenet, P, O'Donovan, C, Pedruzzi, I, Pichler, K, Poggioli, D, Porras Millán, P, Poux, S, Rivoire, C, Roechert, B, Sawford, T, Schneider, M, Stutz, A, Sundaram, S, Tognolli, M, Xenarios, I, Foulgar, R, Lomax, J, Roncaglia, P, Khodiyar, V K, Lovering, R C, Talmud, P J, Chibucos, M, Giglio, M Gwinn, Chang, H -Y, Hunter, S, McAnulla, C, Mitchell, A, Sangrador, A, Stephan, R, Harris, M A, Oliver, S G, Rutherford, K, Wood, V, Bahler, J, Lock, A, Kersey, P J, McDowall, D M

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Annotation of biologically relevant ligands in UniProtKB using ChEBI von Coudert, Elisabeth, Gehant, Sebastien, de Castro, Edouard, Pozzato, Monica, Baratin, Delphine, Neto, Teresa, Sigrist, Christian J A, Redaschi, Nicole, Bridge, Alan

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The Gene Ontology: enhancements for 2011

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Ongoing and future developments at the Universal Protein Resource von Morgat, Anne, Apweiler, Rolf, Martin, Maria-Jesus, O'Donovan, C., Magrane, M., Alam-Faruque, Y., Antunes, R., Barrell, D., Bely, B., Bingley, M., Binns, D., Bower, L., Browne, P., Wm, Chan, Dimmer, E., Eberhardt, R., Fazzini, Pier-Francesco, Fedotov, A., Foulger, R., Garavelli, J., Lg, Castro, Huntley, R., Jacobsen, J., Kleen, M., Laiho, K., Legge, D., Lin, Q., Liu, W., Luo, J., Orchard, S., Patient, S., Pichler, K., Poggioli, D., Pontikos, N., Pruess, M., Rosanoff, S., Sawford, T., Sehra, H., Turner, E., Corbett, M., Donnelly, M., Rensburg P, Van, Xenarios, I., Bougueleret, L., Auchincloss, A., Argoud-Puy, G., Axelsen, K., Bairoch, A., Baratin, D., Mc, Blatter, Boeckmann, B., Bolleman, J., Bollondi, L., Boutet, E., Sb, Quintaje, Breuza, L., Bridge, A., Decastro, E., Coudert, E., Cusin, I., Doche, M., Dornevil, D., Duvaud, S., Estreicher, A., Famiglietti, L., Feuermann, M., Gehant, S., Ferro, S., Gasteiger, E., Gateau, A., Gerritsen, V., Gos, A., Gruaz-Gumowski, N., Hinz, U., Hulo, C., Hulo, N., James, J., Jimenez, S., Jungo, F., Kappler, T., Keller, G., Lara, V., Lemercier, P., Lieberherr, D., Martin, X., Masson, P., Moinat, M., Paesano, S., Pedruzzi, I., Pilbout, S., Poux, S., Pozzato, M., Redaschi, N., Rivoire, C., Roechert, B., Schneider, M., Sigrist, C., Sonesson, K., Staehli, S., Stanley, E.

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Maternal microchimerism in the livers of patients with biliary atresia von Suskind, David L, Rosenthal, Philip, Heyman, Melvin B, Kong, Denice, Magrane, Greg, Baxter-Lowe, Lee-Ann, Muench, Marcus O

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy von Jiang, Y, Oron, TR, Clark, WT, Bankapur, AR, D'Andrea, D, Lepore, R, Funk, CS, Kahanda, I, Verspoor, KM, Ben-Hur, A, Koo, DCE, Penfold-Brown, D, Youngs, N, Bonneau, R, Lin, A, Sahraeian, SME, Martelli, PL, Profiti, G, Casadio, R, Cao, R, Zhong, Z, Cheng, J, Skunca, N, Dogan, T, Hakala, K, Mehryary, F, Ginter, F, Fang, H, Smithers, B, Gough, J, Koskinen, P, Chen, C-T, Cozzetto, D, Minneci, F, Jones, DT, Dukka, BKC, Khan, IK, Kihara, D, Ofer, D, Rappoport, N, Stern, A, Cibrian-Uhalte, E, Denny, P, Foulger, RE, Legge, D, Lovering, RC, Magrane, M, Melidoni, AN, Pichler, K, Shypitsyna, A, Li, B, ElShal, S, Dawson, NL, Sillitoe, I, Bhat, P, Nepusz, T, Paccanaro, A, Pavlidis, P, Feng, S, Cejuela, JM, Goldberg, T, Richter, L, Gabaldon, T, Supek, F, Gong, Q, Ning, W, Tian, W, Fontana, P, Toppo, S, Ferrari, C, Giollo, M, Piovesan, D, Del Pozo, A, Benso, A, Politano, G, Savino, A, Rehman, HU, Valentini, G, Bargsten, JW, Gemovic, B, Perovic, V, Almeida-e-Silva, DC, Vencio, RZN, Sharan, M, Vogel, J, Kansakar, L, Zhang, S, Vucetic, S, Wang, Z, Sternberg, MJE, Huntley, RP, Martin, MJ, O'Donovan, C, Robinson, PN, Moreau, Y, Linial, M, Orengo, CA, Rost, B, Greene, CS, Radivojac, P

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy von Jiang, Y, Oron, T.R, Clark, W.T, Bankapur, A.R, D'Andrea, D, Lepore, R, Funk, C.S, Kahanda, I, Verspoor, K.M, Ben-Hur, A, Koo, E, Penfold-Brown, D, Shasha, D, Youngs, N, Bonneau, R, Lin, A, Sahraeian, S.M.E, Martelli, P.L, Profiti, G, Casadio, R, Cao, R, Zhong, Z, Cheng, J, Altenhoff, A, Skunca, N, Dessimoz, C, Dogan, T, Hakala, K, Kaewphan, S, Mehryary, F, Salakoski, T, Ginter, F, Fang, H, Smithers, B, Oates, M, Gough, J, Toronen, P, Koskinen, P, Holm, L, Chen, C.T, Hsu, W.L, Bryson, K, Cozzetto, D, Minneci, F, Jones, D.T, Chapman, S, Dukka, B.K.C, Khan, I.K, Kihara, D, Ofer, D, Rappoport, N, Stern, A, Cibrian-Uhalte, E, Denny, P, Foulger, R.E, Hieta, R, Legge, D, Lovering, R.C, Magrane, M, Melidoni, A.N, Mutowo-Meullenet, P, Pichler, K, Shypitsyna, A, Li, B, Zakeri, Pooya, Elshal, Sarah, Tranchevent, Léon-Charles, Das, S, Dawson, N.L, Lee, D, Lees, J.G, Sillitoe, I, Bhat, P, Nepusz, T, Romero, A.E, Sasidharan, R, Yang, H, Paccanaro, A, Gillis, J, Sedno-Cort'es, A.E, Pavlidis, P, Feng, S, Cejuela, J.M, Goldberg, T, Hamp, T, Richter, L, Salamov, A, Gabaldon, T, Marcet-Houben, M, Supek, F, Gong, Q, Ning, W, Zhou, Y, Tian, W, Falda, M, Fontana, P, Lavezzo, E, Toppo, S, Ferrari, C, Giollo, M

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Corporate support: The cornerstone of the retreat's success von Magrane, Diane M., Johanssen, Pamela M., Rusch, Roberta B.

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Tools for Integrating Women's Health into Medical Education: Clinical Cases and Concept Mapping von Weiss, Lucia Beck, Levison, Sandra P

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Bovine aortic endothelial cells express a variant of the very low density lipoprotein receptor that lacks the O-linked sugar domain von Magrané, J, Reina, M, Pagan, R, Luna, A, Casaroli-Marano, R P, Angelin, B, Gåfvels, M, Vilaró, S

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The Gene Ontology resource: enriching a GOld mine von Douglass, E, Unni, DR, Harris, NL, Basu, S, Hartline, E, Fey, P, Thomas, PD, Albou, L-P, Ebert, D, Mi, H, Huang, X, Siegele, DA, Attrill, H, Marygold, SJ, Falls, K, Zhou, P, Goodman, JL, Strelets, VB, Thurmond, J, Ishtiaq, R, Rodríguez-López, M, Acencio, ML, Kuiper, M, Saverimuttu, SCC, Su, R, Chibucos, M, Giglio, M, Nadendla, S, Duesbury, MJ, Del-Toro, N, Porras, P, Orchard, S, Shrivastava, A, Finn, RD, Mitchell, AL, Rawlings, ND, Richardson, L, Sangrador-Vegas, A, Blake, JA, Dolan, ME, Drabkin, HJ, Hill, DP, Ni, L, Wood, V, Bähler, J, Bolton, ER, De Pons, JL, Dwinell, MR, Hayman, GT, Kaldunski, ML, Kwitek, AE, Laulederkind, SJF, Wang, S-J, D’Eustachio, P, Matthews, L, Engel, SR, Miyasato, SR, Weng, S, Wong, ED, Morgat, A, Bakker, E, Berardini, TZ, Subramaniam, S, Arighi, CN, Auchincloss, A, Axelsen, K, Argoud-Puy, G, Bateman, A, Blatter, M-C, Bowler, E, Breuza, L, Britto, R, Casas, CC, Denny, P, Estreicher, A, Gos, A, Gruaz-Gumowski, N, Laiho, K, Lieberherr, D, Lock, A, Lussi, Y, Magrane, M, Martin, MJ, Masson, P, Natale, DA, Hyka-Nouspikel, N, Pedruzzi, I, Poux, S, Pundir, S, Speretta, E, Zaru, R, Wu, CH, Diehl, AD, Chan, JN, Grove, C, Raciti, D, Howe, K, Stein, L, Westerfield, M, Jaiswal, P

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Implementing women's health competencies into the undergraduate medical school curriculum von BARBIERI, Robert L, CAIN, Joanna M, DEPP, Richard, DONOGHUE, Glenda D, HERBERT, William N. P, MAGRANE, Diane M, MILLER, Frank C, REBAR, Robert W, RUSCH, Roberta B

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A Coordinated Approach by Public Domain Bioinformatics Resources to Aid the Fight Against Alzheimer's Disease Through Expert Curation of Key Protein Targets von Breuza, L, Arighi, CN, Argoud-Puy, G, Casals-Casas, C, Estreicher, A, Famiglietti, ML, Georghiou, G, Gos, A, Gruaz-Gumowski, N, Hinz, U, Hyka-Nouspikel, N, Kramarz, B, Lovering, RC, Lussi, Y, Magrane, M, Masson, P, Perfetto, L, Poux, S, Rodriguez-Lopez, M, Stoeckert, C, Sundaram, S, Wang, L-S, Wu, E, Orchard, S, IMEx Consortium, UniProt Consortium

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy von Jiang, Y, Oron, TR, Clark, WT, Bankapur, AR, D'Andrea, D, Lepore, R, Funk, CS, Kahanda, I, Verspoor, KM, Ben-Hur, A, Koo, DACE, Penfold-Brown, D, Youngs, N, Bonneau, R, Lin, A, Sahraeian, SM, Martelli, PL, Profiti, G, Casadio, R, Cao, R, Zhong, Z, Cheng, J, Skunca, N, Dogan, T, Hakala, K, Mehryary, F, Ginter, F, Fang, H, Smithers, B, Gough, J, Koskinen, P, Chen, CT, Hsu, WL, Cozzetto, D, Minneci, F, Jones, DT, Bkc, D, Khan, IK, Kihara, D, Ofer, D, Rappoport, N, Stern, A, Denny, P, Foulger, RE, Legge, D, Magrane, M, Melidoni, AN, Pichler, K, Shypitsyna, A, Li, B, ElShal, S, Tranchevent, LC, Dawson, NL, Sillitoe, I, Bhat, P, Nepusz, T, Paccanaro, A, Sedeño-Cortés, AE, Pavlidis, P, Feng, S, Cejuela, JM, Goldberg, T, Richter, L, Gabaldon, T, Supek, F, Gong, Q, Ning, W, Tian, W, Fontana, P, Toppo, S, Ferrari, C, Giollo, M, Piovesan, D, Del Pozo, A, Benso, A, Politano, G, Savino, A, Rehman, HU, Valentini, G, Bargsten, JW, van Dijk, AD, Gemovic, B, Perovic, V, Sharan, M, Vogel, J, Kansakar, L, Zhang, S, Vucetic, S, Wang, Z, Sternberg, MJ, Huntley, RP, Martin, MJ, O'Donovan, C, Robinson, PN, Moreau, Y, Linial, M, Orengo, CA, Rost, B, Greene, CS, Radivojac, P

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Gene Ontology Consortium: going forward von Christie, KR, Drabkin, HJ, Hill, DP, Sitnikov, D, Burgess, S, Buza, T, Wang, H, Carbon, S, Dietze, H, Feuermann, M, Basu, S, Chisholm, RL, Dodson, RJ, Mi, H, Muruganujan, A, Aleksander, SA, McIntosh, BK, Renfro, DP, Attrill, H, Osumi-Sutherland, D, Parkinson, H, Roncaglia, P, Lovering, RC, Talmud, PJ, Denny, P, Foulger, RE, Giglio, MG, Chang, HY, Fraser, M, Mitchell, A, Pesseat, S, Sangrador, A, Scheremetjew, M, Young, SY, Harris, MA, Oliver, SG, Rutherford, K, Wood, V, Bahler, J, Lock, A, McDowall, MD, Staines, DM, Dwinell, M, Wang, SJ, Petri, V, D'Eustachio, P, Binkley, G, Costanzo, MC, Demeter, J, Dwight, SS, Engel, SR, Inglis, DO, Miyasato, SR, Paskov, K, Roe, G, Simison, M, Nash, RS, Weng, S, Berardini, TZ, Li, D, Argasinska, J, Arighi, C, Auchincloss, A, Bateman, A, Bely, B, Bonilla, C, Boutet, E, Breuza, L, Bridge, A, Casals, C, Coudert, E, Cusin, I, Duek-Roggli, P, Famiglietti, L, Gruaz-Gumowski, N, Hatton-Ellis, E, Huntley, R, Jungo, F, Laiho, K, MacDougall, A, Martin, M, Mutowo, P, O'Donovan, C, Pedruzzi, I, Pichler, K, Poggioli, D, Roechert, B, Sawford, T, Schneider, M, Shypitsyna, A, Stutz, A, Sundaram, S, Wu, C, Chan, J, Kishore, R, Sternberg, PW, Van Auken, K, Muller, HM, Li, Y, Westerfield, M

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy von Bankapur, Asma R, Kahanda, Indika, Verspoor, Karin M, Koo, Emily, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sayed ME Sahraeian, Martelli, Pier Luigi, Profiti, Giuseppe, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Hakala, Kai, Mehryary, Farrokh, Salakoski, Tapio, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Holm, Liisa, Ching-Tai, Chen, Bryson, Kevin, Minneci, Federico, Chapman, Samuel, Khan, Ishita K, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Cibrian-Uhalte, Elena, Denny, Paul, Hieta, Reija, Magrane, Michele, Melidoni, Anna N, Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Léon-Charles Tranchevent, Lees, Jonathan G, Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Pavlidis, Paul, Goldberg, Tatyana, Richter, Lothar, Salamov, Asaf, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Wei, Ning, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Giollo, Manuel, Piovesan, Damiano, Angela del Pozo, Fernández, José M, Valencia, Alfonso, Tress, Michael L, Benso, Alfredo, Stefano Di Carlo, Savino, Alessandro, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W, Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Vencio, Ricardo ZN, Sharan, Malvika, Kansakar, Lakesh, Vucetic, Slobodan, Sternberg, Michael JE, Wass, Mark N, Huntley, Rachael P, Martin, Maria J, O'Donovan, Claire, Robinson, Peter N, Babbitt, Patricia C, Brenner, Steven E, Linial, Michal, Rost, Burkhard, Greene, Casey S, Friedberg, Iddo, Radivojac, Predrag

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Gene Ontology annotations and resources von Dolan, M, Drabkin, H, Hill, DP, Li, N, Sitnikov, D, Bridges, S, Burgess, S, Buza, T, McCarthy, F, Peddinti, D, Pillai, L, Dietze, H, Gaudet, P, Chrisholm, RL, Fey, P, Kibbe, WA, Siegele, DA, McIntosh, BK, Renfro, DP, Zweifel, AE, Hu, JC, Brown, NH, Tweedie, S, Alam-Faruque, Y, Apweiler, R, Auchinchloss, A, Axelsen, K, Bely, B, Bouguerleret, L, Breuza, L, Bridge, A, Chan, WM, Coudert, E, Dimmer, E, Estreicher, A, Feuermann, M, Gos, A, Gruaz-Gumowski, N, Hinz, C, Hulo, C, Huntley, R, James, J, Jungo, F, Magrane, M, Masson, P, Mutowo-Muellenet, P, O'Donovan, C, Pedruzzi, I, Pichler, K, Poggioli, D, Porras Millán, P, Poux, S, Rivoire, C, Roechert, B, Sawford, T, Schneider, M, Stutz, A, Xenarios, I, Foulgar, R, Lomax, J, Roncaglia, P, Khodiyar, VK, Lovering, RC, Talmud, PJ, Chibucos, M, Giglio, MG, Chang, H, McAnulla, C, Stephan, R, Harris, MA, Oliver, SG, Rutherford, K, Wood, V, Bahler, J, Lock, A, Kersey, PJ, McDowall, DM, Laulederkind, S, Hayman, T, Wang, S, Lowry, T, D'Eustachio, P, Matthews, L, Balakrishnan, R, Binkley, G, Cherry, JM, Costanzo, MC, Dwight, SS, Fisk, DG, Hitz, BC, Karra, K, Park, J, Skrzypek, MS, Weng, S, Wong, ED, Berardini, TZ, Sternberg, P, Van Auken, K, Howe, D, Westerfield, M

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