Evaluation of Germline Structural Variant Calling Methods for Nanopore Sequencing Data von Bolognini, Davide, Magi, Alberto

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Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript von BENELLI, Matteo, PESCUCCI, Chiara, MARSEGLIA, Giuseppina, SEVERGNINI, Marco, TORRICELLI, Francesca, MAGI, Alberto

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Detection of Genomic Structural Variants from Next-Generation Sequencing Data von Tattini, Lorenzo, D'Aurizio, Romina, Magi, Alberto

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From multitude to singularity: An up-to-date overview of scRNA-seq data generation and analysis von Carangelo, Giulia, Magi, Alberto, Semeraro, Roberto

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XCAVATOR: accurate detection and genotyping of copy number variants from second and third generation whole-genome sequencing experiments von Magi, Alberto, Pippucci, Tommaso, Sidore, Carlo

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Xome-Blender: A novel cancer genome simulator von Semeraro, Roberto, Orlandini, Valerio, Magi, Alberto

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Genetic Bases of Bicuspid Aortic Valve: The Contribution of Traditional and High-Throughput Sequencing Approaches on Research and Diagnosis von Giusti, Betti, Sticchi, Elena, De Cario, Rosina, Magi, Alberto, Nistri, Stefano, Pepe, Guglielmina

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NanoR: A user-friendly R package to analyze and compare nanopore sequencing data von Bolognini, Davide, Bartalucci, Niccolò, Mingrino, Alessandra, Vannucchi, Alessandro Maria, Magi, Alberto

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Read count approach for DNA copy number variants detection von Magi, Alberto, Tattini, Lorenzo, Pippucci, Tommaso, Torricelli, Francesca, Benelli, Matteo

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Tubular cell polyploidy protects from lethal acute kidney injury but promotes consequent chronic kidney disease von De Chiara, Letizia, Conte, Carolina, Semeraro, Roberto, Diaz-Bulnes, Paula, Angelotti, Maria Lucia, Mazzinghi, Benedetta, Molli, Alice, Antonelli, Giulia, Landini, Samuela, Melica, Maria Elena, Peired, Anna Julie, Maggi, Laura, Donati, Marta, La Regina, Gilda, Allinovi, Marco, Ravaglia, Fiammetta, Guasti, Daniele, Bani, Daniele, Cirillo, Luigi, Becherucci, Francesca, Guzzi, Francesco, Magi, Alberto, Annunziato, Francesco, Lasagni, Laura, Anders, Hans-Joachim, Lazzeri, Elena, Romagnani, Paola

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Nanopore sequencing from liquid biopsy: analysis of copy number variations from cell-free DNA of lung cancer patients von Martignano, Filippo, Munagala, Uday, Crucitta, Stefania, Mingrino, Alessandra, Semeraro, Roberto, Del Re, Marzia, Petrini, Iacopo, Magi, Alberto, Conticello, Silvestro G

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SLMSuite: a suite of algorithms for segmenting genomic profiles von Orlandini, Valerio, Provenzano, Aldesia, Giglio, Sabrina, Magi, Alberto

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GASOLINE: detecting germline and somatic structural variants from long-reads data von Magi, Alberto, Mattei, Gianluca, Mingrino, Alessandra, Caprioli, Chiara, Ronchini, Chiara, Frigè, Gianmaria, Semeraro, Roberto, Baragli, Marta, Bolognini, Davide, Colombo, Emanuela, Mazzarella, Luca, Pelicci, Pier Giuseppe

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Sanger Validation of High-Throughput Sequencing in Genetic Diagnosis: Still the Best Practice? von De Cario, Rosina, Kura, Ada, Suraci, Samuele, Magi, Alberto, Volta, Andrea, Marcucci, Rossella, Gori, Anna Maria, Pepe, Guglielmina, Giusti, Betti, Sticchi, Elena

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Apolipoprotein(a) Kringle-IV Type 2 Copy Number Variation Is Associated with Venous Thromboembolism von Sticchi, Elena, Magi, Alberto, Kamstrup, Pia R, Marcucci, Rossella, Prisco, Domenico, Martinelli, Ida, Mannucci, Pier Mannuccio, Abbate, Rosanna, Giusti, Betti

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Detection of Runs of Homozygosity from Whole Exome Sequencing Data: State of the Art and Perspectives for Clinical, Population and Epidemiological Studies von Pippucci, Tommaso, Magi, Alberto, Gialluisi, Alessandro, Romeo, Giovanni

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EXCAVATOR: detecting copy number variants from whole-exome sequencing data von Magi, Alberto, Tattini, Lorenzo, Cifola, Ingrid, D'Aurizio, Romina, Benelli, Matteo, Mangano, Eleonora, Battaglia, Cristina, Bonora, Elena, Kurg, Ants, Seri, Marco, Magini, Pamela, Giusti, Betti, Romeo, Giovanni, Pippucci, Tommaso, De Bellis, Gianluca, Abbate, Rosanna, Gensini, Gian Franco

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Versatile Quality Control Methods for Nanopore Sequencing von Bolognini, Davide, Semeraro, Roberto, Magi, Alberto

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Using XCAVATOR and EXCAVATOR2 to Identify CNVs from WGS, WES, and TS Data von D'Aurizio, Romina, Semeraro, Roberto, Magi, Alberto

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High-resolution Nanopore methylome-maps reveal random hyper-methylation at CpG-poor regions as driver of chemoresistance in leukemias von Magi, Alberto, Mattei, Gianluca, Mingrino, Alessandra, Caprioli, Chiara, Ronchini, Chiara, Frigè, Gianmaria, Semeraro, Roberto, Bolognini, Davide, Rambaldi, Alessandro, Candoni, Anna, Colombo, Emanuela, Mazzarella, Luca, Pelicci, Pier Giuseppe

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