GeNeo: A Bioinformatics Toolbox for Genomics-Guided Neoepitope Prediction von Al Seesi, Sahar, Al-Okaily, Anas, Shcheglova, Tatiana V, Sherafat, Elham, Alqahtani, Fahad H, Hagymasi, Adam T, Kaur, Anupinder, Srivastava, Pramod K, Măndoiu, Ion I

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Single cell RNA-seq data clustering using TF-IDF based methods von Moussa, Marmar, Măndoiu, Ion I

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Semi-supervised learning for somatic variant calling and peptide identification in personalized cancer immunotherapy von Sherafat, Elham, Force, Jordan, Măndoiu, Ion I

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Power Efficient Range Assignment for Symmetric Connectivity in Static Ad Hoc Wireless Networks von Althaus, E, Calinescu, G, Mandoiu, I I, Prasad, S, Tchervenski, N, Zelikovsky, A

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Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data von Mandric, Igor, Temate-Tiagueu, Yvette, Shcheglova, Tatiana, Al Seesi, Sahar, Zelikovsky, Alex, Mandoiu, Ion I

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Locality Sensitive Imputation for Single Cell RNA-Seq Data von Moussa, Marmar, Măndoiu, Ion I

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SC1: A Tool for Interactive Web-Based Single-Cell RNA-Seq Data Analysis von Moussa, Marmar, Măndoiu, Ion I

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Statistical Mitogenome Assembly with RepeaTs von Alqahtani, Fahad, Măndoiu, Ion I

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Estimation of alternative splicing isoform frequencies from RNA-Seq data von Nicolae, Marius, Mangul, Serghei, Măndoiu, Ion I, Zelikovsky, Alex

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Metabolic Pathway Predictions for Metabolomics: A Molecular Structure Matching Approach von Hamdalla, Mai A, Rajasekaran, Sanguthevar, Grant, David F, Măndoiu, Ion I

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Feature selection and classifier performance on diverse bio- logical datasets von Hemphill, Edward, Lindsay, James, Lee, Chih, Măndoiu, Ion I, Nelson, Craig E

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Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates von Al Seesi, Sahar, Tiagueu, Yvette Temate, Zelikovsky, Alexander, Măndoiu, Ion I

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Neuraminidase subtyping of avian influenza viruses with PrimerHunter-designed primers and quadruplicate primer pools von Huang, Yanyan, Khan, Mazhar I, Khan, Mazhar, Măndoiu, Ion, Măndoiu, Ion I

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Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021) von Bansal, Mukul S, Măndoiu, Ion I, Moussa, Marmar, Patterson, Murray, Rajasekaran, Sanguthevar, Skums, Pavel, Zelikovsky, Alexander

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Computational Advances in Bio and Medical Sciences: 11th International Conference, ICCABS 2021, Virtual Event, December 16-18, 2021, Revised Selected Papers von Bansal, Mukul S, Măndoiu, Ion, Moussa, Marmar, Patterson, Murray, Rajasekaran, Sanguthevar, Skums, Pavel, Zelikovsky, Alexander

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Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data von Rondel, Filipp Martin, Hosseini, Roya, Sahoo, Bikram, Knyazev, Sergey, Mandric, Igor, Stewart, Frank, Măndoiu, Ion I, Pasaniuc, Bogdan, Porozov, Yuri, Zelikovsky, Alexander

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Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity von Duan, Fei, Duitama, Jorge, Al Seesi, Sahar, Ayres, Cory M, Corcelli, Steven A, Pawashe, Arpita P, Blanchard, Tatiana, McMahon, David, Sidney, John, Sette, Alessandro, Baker, Brian M, Mandoiu, Ion I, Srivastava, Pramod K

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Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data von Duitama, Jorge, Srivastava, Pramod K, Măndoiu, Ion I

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Computational Advances in Bio and Medical Sciences: 10th International Conference, ICCABS 2020, Virtual Event, December 10-12, 2020, Revised Selected Papers von Jha, Sumit Kumar, Măndoiu, Ion, Rajasekaran, Sanguthevar, Skums, Pavel, Zelikovsky, Alex

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Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development von Karunakaran, Devi Krishna Priya, Al Seesi, Sahar, Banday, Abdul Rouf, Baumgartner, Marybeth, Olthof, Anouk, Lemoine, Christopher, Măndoiu, Ion I, Kanadia, Rahul N

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