Long noncoding RNAs in cancer: mechanisms of action and technological advancements von Bartonicek, Nenad, Maag, Jesper L V, Dinger, Marcel E

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Cannabinoid Effects on β Amyloid Fibril and Aggregate Formation, Neuronal and Microglial-Activated Neurotoxicity In Vitro von Janefjord, Emelie, Mååg, Jesper L. V., Harvey, Benjamin S., Smid, Scott D.

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Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data von Everaert, Celine, Luypaert, Manuel, Maag, Jesper L. V., Cheng, Quek Xiu, Dinger, Marcel E., Hellemans, Jan, Mestdagh, Pieter

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A gene–environment-induced epigenetic program initiates tumorigenesis von Alonso-Curbelo, Direna, Ho, Yu-Jui, Burdziak, Cassandra, Maag, Jesper L. V., Morris, John P., Chandwani, Rohit, Chen, Hsuan-An, Tsanov, Kaloyan M., Barriga, Francisco M., Luan, Wei, Tasdemir, Nilgun, Livshits, Geulah, Azizi, Elham, Chun, Jaeyoung, Wilkinson, John E., Mazutis, Linas, Leach, Steven D., Koche, Richard, Pe’er, Dana, Lowe, Scott W.

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CCR6 Defines Memory B Cell Precursors in Mouse and Human Germinal Centers, Revealing Light-Zone Location and Predominant Low Antigen Affinity von Suan, Dan, Kräutler, Nike J., Maag, Jesper L.V., Butt, Danyal, Bourne, Katherine, Hermes, Jana R., Avery, Danielle T., Young, Clara, Statham, Aaron, Elliott, Michael, Dinger, Marcel E., Basten, Antony, Tangye, Stuart G., Brink, Robert

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Dynamic expression of long noncoding RNAs and repeat elements in synaptic plasticity von Maag, Jesper L V, Panja, Debabrata, Sporild, Ida, Patil, Sudarshan, Kaczorowski, Dominik C, Bramham, Clive R, Dinger, Marcel E, Wibrand, Karin

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Contrasting protective effects of cannabinoids against oxidative stress and amyloid-β evoked neurotoxicity in vitro von Harvey, Benjamin S., Ohlsson, Katharina S., Mååg, Jesper L.V., Musgrave, Ian F., Smid, Scott D.

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lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs von Quek, Xiu Cheng, Thomson, Daniel W, Maag, Jesper L V, Bartonicek, Nenad, Signal, Bethany, Clark, Michael B, Gloss, Brian S, Dinger, Marcel E

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Novel Aberrations Uncovered in Barrett's Esophagus and Esophageal Adenocarcinoma Using Whole Transcriptome Sequencing von Maag, Jesper L V, Fisher, Oliver M, Levert-Mignon, Angelique, Kaczorowski, Dominik C, Thomas, Melissa L, Hussey, Damian J, Watson, David I, Wettstein, Antony, Bobryshev, Yuri V, Edwards, Melanie, Dinger, Marcel E, Lord, Reginald V

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CD151 Gene and Protein Expression Provides Independent Prognostic Information for Patients with Adenocarcinoma of the Esophagus and Gastroesophageal Junction Treated by Esophagecto... von Fisher, Oliver M., Levert-Mignon, Angelique J., Lehane, Christopher W., Botelho, Natalia K., Maag, Jesper L. V., Thomas, Melissa L., Edwards, Melanie, Lord, Sarah J., Bobryshev, Yuri V., Whiteman, David C., Lord, Reginald V.

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SWI/SNF Complex Mutations Promote Thyroid Tumor Progression and Insensitivity to Redifferentiation Therapies von Saqcena, Mahesh, Leandro-Garcia, Luis Javier, Maag, Jesper L V, Tchekmedyian, Vatche, Krishnamoorthy, Gnana P, Tamarapu, Prasanna P, Tiedje, Vera, Reuter, Vincent, Knauf, Jeffrey A, de Stanchina, Elisa, Xu, Bin, Liao, Xiao-Hui, Refetoff, Samuel, Ghossein, Ronald, Chi, Ping, Ho, Alan L, Koche, Richard P, Fagin, James A

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FOXA1 Mutations Reveal Distinct Chromatin Profiles and Influence Therapeutic Response in Breast Cancer von Arruabarrena-Aristorena, Amaia, Maag, Jesper L.V., Kittane, Srushti, Cai, Yanyan, Karthaus, Wouter R., Ladewig, Erik, Park, Jane, Kannan, Srinivasaraghavan, Ferrando, Lorenzo, Cocco, Emiliano, Ho, Sik Y., Tan, Daisylyn S., Sallaku, Mirna, Wu, Fan, Acevedo, Barbara, Selenica, Pier, Ross, Dara S., Witkin, Matthew, Sawyers, Charles L., Reis-Filho, Jorge S., Verma, Chandra S., Jauch, Ralf, Koche, Richard, Baselga, José, Razavi, Pedram, Toska, Eneda, Scaltriti, Maurizio

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Tumor-intrinsic PRC2 inactivation drives a context-dependent immune-desert microenvironment and is sensitized by immunogenic viruses von Yan, Juan, Chen, Yuedan, Patel, Amish J, Warda, Sarah, Lee, Cindy J, Nixon, Briana G, Wong, Elissa Wp, Miranda-Román, Miguel A, Yang, Ning, Wang, Yi, Pachai, Mohini R, Sher, Jessica, Giff, Emily, Tang, Fanying, Khurana, Ekta, Singer, Sam, Liu, Yang, Galbo, Jr, Phillip M, Maag, Jesper Lv, Koche, Richard P, Zheng, Deyou, Antonescu, Cristina R, Deng, Liang, Li, Ming O, Chen, Yu, Chi, Ping

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The long non-coding RNA NEAT1 is responsive to neuronal activity and is associated with hyperexcitability states von Barry, Guy, Briggs, James A., Hwang, Do Won, Nayler, Sam P., Fortuna, Patrick R. J., Jonkhout, Nicky, Dachet, Fabien, Maag, Jesper L. V., Mestdagh, Pieter, Singh, Erin M., Avesson, Lotta, Kaczorowski, Dominik C., Ozturk, Ezgi, Jones, Nigel C., Vetter, Irina, Arriola-Martinez, Luis, Hu, Jianfei, Franco, Gloria R., Warn, Victoria M., Gong, Andrew, Dinger, Marcel E., Rigo, Frank, Lipovich, Leonard, Morris, Margaret J., O’Brien, Terence J., Lee, Dong Soo, Loeb, Jeffrey A., Blackshaw, Seth, Mattick, John S., Wolvetang, Ernst J.

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Widespread promoter methylation of synaptic plasticity genes in long-term potentiation in the adult brain in vivo von Maag, Jesper L V, Kaczorowski, Dominik C, Panja, Debabrata, Peters, Timothy J, Bramham, Clive R, Wibrand, Karin, Dinger, Marcel E

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gganatogram: An R package for modular visualisation of anatograms and tissues based on ggplot2 [version 2; peer review: 2 approved] von Maag, Jesper L.V

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Corrigendum: Dynamic expression of long noncoding RNAs and repeat elements in synaptic plasticity von Maag, Jesper L V, Panja, Debabrata, Sporild, Ida, Patil, Sudarshan S, Kaczorowski, Dominik C, Bramham, Clive R, Dinger, Marcel E, Wibrand, Karin

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gganatogram: An R package for modular visualisation of anatograms and tissues based on ggplot2 [version 1; peer review: 2 approved] von Maag, Jesper L.V

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PRC2-Inactivating Mutations in Cancer Enhance Cytotoxic Response to DNMT1-Targeted Therapy via Enhanced Viral Mimicry von Patel, Amish J, Warda, Sarah, Maag, Jesper L V, Misra, Rohan, Miranda-Román, Miguel A, Pachai, Mohini R, Lee, Cindy J, Li, Dan, Wang, Naitao, Bayshtok, Gabriella, Fishinevich, Eve, Meng, Yinuo, Wong, Elissa W P, Yan, Juan, Giff, Emily, Pappalardi, Melissa B, McCabe, Michael T, Fletcher, Jonathan A, Rudin, Charles M, Chandarlapaty, Sarat, Scandura, Joseph M, Koche, Richard P, Glass, Jacob L, Antonescu, Cristina R, Zheng, Deyou, Chen, Yu, Chi, Ping

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Abstract 3439: FOXA1 mutations reveal distinct chromatin profiles and influence therapeutic response in breast cancer von Arruabarrena-Aristorena, Amaia, Maag, Jesper LV, Kittane, Srushti, Cai, Yanyan, Park, Jane, Razavi, Pedram, Ferrando, Lorenzo, Selenica, Pier, Karthaus, Wouter R., Kannan, Srinivasaraghavan, Cocco, Emiliano, Ho, Sik Y., Tan, Daisylyn Senna, Sallaku, Mirna, Sawyers, Charles L., Reis-Fihlo, Jorge S., Verma, Chandra S., Jauch, Ralf, Koche, Richard, Baselga, José, Toska, Eneda, Scaltriti, Maurizio

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