Alternative splicing and cancer: insights, opportunities, and challenges from an expanding view of the transcriptome von Cherry, Sara, Lynch, Kristen W.

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The three as: Alternative splicing, alternative polyadenylation and their impact on apoptosis in immune function von Blake, Davia, Lynch, Kristen W.

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Control of alternative splicing in immune responses: many regulators, many predictions, much still to learn von Martinez, Nicole M., Lynch, Kristen W.

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HnRNP L and HnRNP A1 Induce Extended U1 snRNA Interactions with an Exon to Repress Spliceosome Assembly von Chiou, Ni-Ting, Shankarling, Ganesh, Lynch, Kristen W.

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A new view of transcriptome complexity and regulation through the lens of local splicing variations von Vaquero-Garcia, Jorge, Barrera, Alejandro, Gazzara, Matthew R, González-Vallinas, Juan, Lahens, Nicholas F, Hogenesch, John B, Lynch, Kristen W, Barash, Yoseph

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Identifying common transcriptome signatures of cancer by interpreting deep learning models von Jha, Anupama, Quesnel-Vallières, Mathieu, Wang, David, Thomas-Tikhonenko, Andrei, Lynch, Kristen W, Barash, Yoseph

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Phosphorylation-Dependent Regulation of PSF by GSK3 Controls CD45 Alternative Splicing von Heyd, Florian, Lynch, Kristen W.

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An optogenetic gene expression system with rapid activation and deactivation kinetics von Motta-Mena, Laura B, Reade, Anna, Mallory, Michael J, Glantz, Spencer, Weiner, Orion D, Lynch, Kristen W, Gardner, Kevin H

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MAJIQlopedia: an encyclopedia of RNA splicing variations in human tissues and cancer von Quesnel-Vallières, Mathieu, Jewell, San, Lynch, Kristen W, Thomas-Tikhonenko, Andrei, Barash, Yoseph

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Alternative splicing redefines landscape of commonly mutated genes in acute myeloid leukemia von Rivera, Osvaldo D., Mallory, Michael J., Quesnel-Vallières, Mathieu, Chatrikhi, Rakesh, Schultz, David C., Carroll, Martin, Barash, Yoseph, Cherry, Sara, Lync, Kristen W.

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A systematic review and meta‐analysis of associations between primarily non‐autistic people's characteristics and attitudes toward autistic people von Kim, So Yoon, Song, Da‐Yea, Bottema‐Beutel, Kristen, Gillespie‐Lynch, Kristen, Cage, Eilidh

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Consequences of regulated pre-mRNA splicing in the immune system von Lynch, Kristen W

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Stem-Loop Recognition by DDX17 Facilitates miRNA Processing and Antiviral Defense von Moy, Ryan H., Cole, Brian S., Yasunaga, Ari, Gold, Beth, Shankarling, Ganesh, Varble, Andrew, Molleston, Jerome M., tenOever, Benjamin R., Lynch, Kristen W., Cherry, Sara

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HnRNP L represses cryptic exons von McClory, Sean P, Lynch, Kristen W, Ling, Jonathan P

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The lncRNA ALPHA specifically targets chikungunya virus to control infection von Basavappa, Megha G., Ferretti, Max, Dittmar, Mark, Stoute, Julian, Sullivan, Megan C., Whig, Kanupriya, Shen, Hui, Liu, Kathy Fange, Schultz, David C., Beiting, Daniel P., Lynch, Kristen W., Henao-Mejia, Jorge, Cherry, Sara

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DEGRADE, MOVE, REGROUP: signaling control of splicing proteins von Heyd, Florian, Lynch, Kristen W.

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Alternative 3′UTR expression induced by T cell activation is regulated in a temporal and signal dependent manner von Blake, Davia, Gazzara, Matthew R., Breuer, Isabel, Ferretti, Max, Lynch, Kristen W.

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Meta-analysis of transcriptomic variation in T-cell populations reveals both variable and consistent signatures of gene expression and splicing von Radens, Caleb M., Blake, Davia, Jewell, Paul, Barash, Yoseph, Lynch, Kristen W.

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RNase L activation in the cytoplasm induces aberrant processing of mRNAs in the nucleus von Burke, James M, Ripin, Nina, Ferretti, Max B, St Clair, Laura A, Worden-Sapper, Emma R, Salgado, Fernando, Sawyer, Sara L, Perera, Rushika, Lynch, Kristen W, Parker, Roy

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Minimal functional domains of paralogues hnRNP L and hnRNP LL exhibit mechanistic differences in exonic splicing repression von Shankarling, Ganesh, Lynch, Kristen W

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