Lattice microbes: High-performance stochastic simulation method for the reaction-diffusion master equation von Roberts, Elijah, Stone, John E., Luthey-Schulten, Zaida

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MultiSeq: unifying sequence and structure data for evolutionary analysis von Roberts, Elijah, Eargle, John, Wright, Dan, Luthey-Schulten, Zaida

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Essential metabolism for a minimal cell von Breuer, Marian, Earnest, Tyler M, Merryman, Chuck, Wise, Kim S, Sun, Lijie, Lynott, Michaela R, Hutchison, Clyde A, Smith, Hamilton O, Lapek, John D, Gonzalez, David J, de Crécy-Lagard, Valérie, Haas, Drago, Hanson, Andrew D, Labhsetwar, Piyush, Glass, John I, Luthey-Schulten, Zaida

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Complete structure of the chemosensory array core signalling unit in an E. coli minicell strain von Burt, Alister, Cassidy, C. Keith, Ames, Peter, Bacia-Verloop, Maria, Baulard, Megghane, Huard, Karine, Luthey-Schulten, Zaida, Desfosses, Ambroise, Stansfeld, Phillip J., Margolin, William, Parkinson, John S., Gutsche, Irina

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Kinetic and structural mechanism for DNA unwinding by a non-hexameric helicase von Carney, Sean P., Ma, Wen, Whitley, Kevin D., Jia, Haifeng, Lohman, Timothy M., Luthey-Schulten, Zaida, Chemla, Yann R.

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Integrating experiments, theory and simulations into whole-cell models von Luthey-Schulten, Zaida

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Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population von Labhsetwar, Piyush, Cole, John Andrew, Roberts, Elijah, Price, Nathan D., Luthey-Schulten, Zaida A.

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Effects of DNA replication on mRNA noise von Peterson, Joseph R., Cole, John A., Fei, Jingyi, Ha, Taekjip, Luthey-Schulten, Zaida A.

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Effects of individual base-pairs on in vivo target search and destruction kinetics of bacterial small RNA von Poddar, Anustup, Azam, Muhammad S., Kayikcioglu, Tunc, Bobrovskyy, Maksym, Zhang, Jichuan, Ma, Xiangqian, Labhsetwar, Piyush, Fei, Jingyi, Singh, Digvijay, Luthey-Schulten, Zaida, Vanderpool, Carin K., Ha, Taekjip

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Classical force field parameters for the heme prosthetic group of cytochrome c von Autenrieth, Felix, Tajkhorshid, Emad, Baudry, Jerome, Luthey‐Schulten, Zaida

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Naturally occurring aminoacyl-tRNA synthetases editing-domain mutations that cause mistranslation in Mycoplasma parasites von Li, Li, Boniecki, Michal T, Jaffe, Jacob D, Imai, Brian S, Yau, Peter M, Luthey-Schulten, Zaida A, Martinis, Susan A

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Dynamical networks in tRNA:protein complexes von Sethi, Anurag, Eargle, John, Black, Alexis A, Luthey-Schulten, Zaida

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Determining the stability of genetic switches: explicitly accounting for mRNA noise von Assaf, Michael, Roberts, Elijah, Luthey-Schulten, Zaida

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Mechanisms of Nanonewton Mechanostability in a Protein Complex Revealed by Molecular Dynamics Simulations and Single-Molecule Force Spectroscopy von Bernardi, Rafael C, Durner, Ellis, Schoeler, Constantin, Malinowska, Klara H, Carvalho, Bruna G, Bayer, Edward A, Luthey-Schulten, Zaida, Gaub, Hermann E, Nash, Michael A

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Optimizing physical energy functions for protein folding von Fujitsuka, Yoshimi, Takada, Shoji, Luthey-Schulten, Zaida A., Wolynes, Peter G.

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Direction Matters: Monovalent Streptavidin/Biotin Complex under Load von Sedlak, Steffen M, Schendel, Leonard C, Melo, Marcelo C. R, Pippig, Diana A, Luthey-Schulten, Zaida, Gaub, Hermann E, Bernardi, Rafael C

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Molecular dynamics simulation of an entire cell von Stevens, Jan A, Grünewald, Fabian, van Tilburg, P A Marco, König, Melanie, Gilbert, Benjamin R, Brier, Troy A, Thornburg, Zane R, Luthey-Schulten, Zaida, Marrink, Siewert J

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Spatially-resolved metabolic cooperativity within dense bacterial colonies von Cole, John A, Kohler, Lars, Hedhli, Jamila, Luthey-Schulten, Zaida

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On the Evolution of Structure in Aminoacyl-tRNA Synthetases von Patrick O'Donoghue, Zaida Luthey-Schulten

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Simulating biological processes: stochastic physics from whole cells to colonies von Earnest, Tyler M, Cole, John A, Luthey-Schulten, Zaida

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