Landscape of Somatic Retrotransposition in Human Cancers von Lee, Eunjung, Iskow, Rebecca, Yang, Lixing, Gokcumen, Omer, Haseley, Psalm, Luquette, Lovelace J., Lohr, Jens G., Harris, Christopher C., Ding, Li, Wilson, Richard K., Wheeler, David A., Gibbs, Richard A., Kucherlapati, Raju, Lee, Charles, Kharchenko, Peter V., Park, Peter J.

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Diverse Mechanisms of Somatic Structural Variations in Human Cancer Genomes von Yang, Lixing, Luquette, Lovelace J., Gehlenborg, Nils, Xi, Ruibin, Haseley, Psalm S., Hsieh, Chih-Heng, Zhang, Chengsheng, Ren, Xiaojia, Protopopov, Alexei, Chin, Lynda, Kucherlapati, Raju, Lee, Charles, Park, Peter J.

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Detecting Somatic Mutations in Normal Cells von Dou, Yanmei, Gold, Heather D., Luquette, Lovelace J., Park, Peter J.

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Somatic mutation in single human neurons tracks developmental and transcriptional history von Lodato, Michael A., Woodworth, Mollie B., Lee, Semin, Evrony, Gilad D., Mehta, Bhaven K., Karger, Amir, Lee, Soohyun, Chittenden, Thomas W., D'Gama, Alissa M., Cai, Xuyu, Luquette, Lovelace J., Lee, Eunjung, Park, Peter J., Walsh, Christopher A.

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Identification of somatic mutations in single cell DNA-seq using a spatial model of allelic imbalance von Luquette, Lovelace J., Bohrson, Craig L., Sherman, Max A., Park, Peter J.

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Accurate detection of mosaic variants in sequencing data without matched controls von Dou, Yanmei, Kwon, Minseok, Rodin, Rachel E., Cortés-Ciriano, Isidro, Doan, Ryan, Luquette, Lovelace J., Galor, Alon, Bohrson, Craig, Walsh, Christopher A., Park, Peter J.

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Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes von Kim, Tae-Min, Xi, Ruibin, Luquette, Lovelace J, Park, Richard W, Johnson, Mark D, Park, Peter J

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Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion von Xi, Ruibin, Hadjipanayis, Angela G, Luquette, Lovelace J, Kim, Tae-Min, Lee, Eunjung, Zhang, Jianhua, Johnson, Mark D, Muzny, Donna M, Wheeler, David A, Gibbs, Richard A, Kucherlapati, Raju, Park, Peter J

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Global impact of somatic structural variation on the DNA methylome of human cancers von Zhang, Yiqun, Yang, Lixing, Kucherlapati, Melanie, Hadjipanayis, Angela, Pantazi, Angeliki, Bristow, Christopher A, Lee, Eunjung Alice, Mahadeshwar, Harshad S, Tang, Jiabin, Zhang, Jianhua, Seth, Sahil, Lee, Semin, Ren, Xiaojia, Song, Xingzhi, Sun, Huandong, Seidman, Jonathan, Luquette, Lovelace J, Xi, Ruibin, Chin, Lynda, Protopopov, Alexei, Park, Peter J, Kucherlapati, Raju, Creighton, Chad J

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A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases von Zhang, Yiqun, Yang, Lixing, Kucherlapati, Melanie, Chen, Fengju, Hadjipanayis, Angela, Pantazi, Angeliki, Bristow, Christopher A., Lee, Eunjung A., Mahadeshwar, Harshad S., Tang, Jiabin, Zhang, Jianhua, Seth, Sahil, Lee, Semin, Ren, Xiaojia, Song, Xingzhi, Sun, Huandong, Seidman, Jonathan, Luquette, Lovelace J., Xi, Ruibin, Chin, Lynda, Protopopov, Alexei, Li, Wei, Park, Peter J., Kucherlapati, Raju, Creighton, Chad J.

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Systematic identification of synergistic drug pairs targeting HIV von Tan, Xu, Hu, Long, Luquette, Lovelace J, Gao, Geng, Liu, Yifang, Qu, Hongjing, Xi, Ruibin, Lu, Zhi John, Park, Peter J, Elledge, Stephen J

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Impact of sequencing depth in ChIP-seq experiments von Jung, Youngsook L., Luquette, Lovelace J., Ho, Joshua W.K., Ferrari, Francesco, Tolstorukov, Michael, Minoda, Aki, Issner, Robbyn, Epstein, Charles B., Karpen, Gary H., Kuroda, Mitzi I., Park, Peter J.

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Estimating enrichment of repetitive elements from high-throughput sequence data von Day, Daniel S, Luquette, Lovelace J, Park, Peter J, Kharchenko, Peter V

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rSW-seq: algorithm for detection of copy number alterations in deep sequencing data von Kim, Tae-Min, Luquette, Lovelace J, Xi, Ruibin, Park, Peter J

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Aging and neurodegeneration are associated with increased mutations in single human neurons von Lodato, Michael A, Rodin, Rachel E, Bohrson, Craig L, Coulter, Michael E, Barton, Alison R, Kwon, Minseok, Sherman, Maxwell A, Vitzthum, Carl M, Luquette, Lovelace J, Yandava, Chandri N, Yang, Pengwei, Chittenden, Thomas W, Hatem, Nicole E, Ryu, Steven C, Woodworth, Mollie B, Park, Peter J, Walsh, Christopher A

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A Pan-Cancer Proteogenomic Atlas of PI3K/AKT/mTOR Pathway Alterations von Zhang, Yiqun, Kwok-Shing Ng, Patrick, Kucherlapati, Melanie, Chen, Fengju, Liu, Yuexin, Tsang, Yiu Huen, de Velasco, Guillermo, Jeong, Kang Jin, Akbani, Rehan, Hadjipanayis, Angela, Pantazi, Angeliki, Bristow, Christopher A., Lee, Eunjung, Mahadeshwar, Harshad S., Tang, Jiabin, Zhang, Jianhua, Yang, Lixing, Seth, Sahil, Lee, Semin, Ren, Xiaojia, Song, Xingzhi, Sun, Huandong, Seidman, Jonathan, Luquette, Lovelace J., Xi, Ruibin, Chin, Lynda, Protopopov, Alexei, Westbrook, Thomas F., Shelley, Carl Simon, Choueiri, Toni K., Ittmann, Michael, Van Waes, Carter, Weinstein, John N., Liang, Han, Henske, Elizabeth P., Godwin, Andrew K., Park, Peter J., Kucherlapati, Raju, Scott, Kenneth L., Mills, Gordon B., Kwiatkowski, David J., Creighton, Chad J.

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Somatic genomic changes in single Alzheimer’s disease neurons von Miller, Michael B., Huang, August Yue, Kim, Junho, Zhou, Zinan, Kirkham, Samantha L., Maury, Eduardo A., Ziegenfuss, Jennifer S., Reed, Hannah C., Neil, Jennifer E., Rento, Lariza, Ryu, Steven C., Ma, Chanthia C., Luquette, Lovelace J., Ames, Heather M., Oakley, Derek H., Frosch, Matthew P., Hyman, Bradley T., Lodato, Michael A., Lee, Eunjung Alice, Walsh, Christopher A.

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Somatic mutation accumulation seen through a single-molecule lens von Luquette, Lovelace J., Park, Peter J.

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Single-cell genome sequencing of human neurons identifies somatic point mutation and indel enrichment in regulatory elements von Luquette, Lovelace J., Miller, Michael B., Zhou, Zinan, Bohrson, Craig L., Zhao, Yifan, Jin, Hu, Gulhan, Doga, Ganz, Javier, Bizzotto, Sara, Kirkham, Samantha, Hochepied, Tino, Libert, Claude, Galor, Alon, Kim, Junho, Lodato, Michael A., Garaycoechea, Juan I., Gawad, Charles, West, Jay, Walsh, Christopher A., Park, Peter J.

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Linked-read analysis identifies mutations in single-cell DNA-sequencing data von Bohrson, Craig L., Barton, Alison R., Lodato, Michael A., Rodin, Rachel E., Luquette, Lovelace J., Viswanadham, Vinay V., Gulhan, Doga C., Cortés-Ciriano, Isidro, Sherman, Maxwell A., Kwon, Minseok, Coulter, Michael E., Galor, Alon, Walsh, Christopher A., Park, Peter J.

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