Proviruses with identical sequences comprise a large fraction of the replication-competent HIV reservoir von Bui, John K, Sobolewski, Michele D, Keele, Brandon F, Spindler, Jonathan, Musick, Andrew, Wiegand, Ann, Luke, Brian T, Shao, Wei, Hughes, Stephen H, Coffin, John M, Kearney, Mary F, Mellors, John W

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Clonally expanded CD4⁺ T cells can produce infectious HIV-1 in vivo von Simonetti, Francesco R., Sobolewski, Michele D., Fyne, Elizabeth, Shao, Wei, Spindler, Jonathan, Hattori, Junko, Anderson, Elizabeth M., Watters, Sarah A., Hill, Shawn, Wu, Xiaolin, Wells, David, Su, Li, Luke, Brian T., Halvas, Elias K., Besson, Guillaume, Penrose, Kerri J., Yang, Zhiming, Kwan, Richard W., Van Waes, Carter, Uldrick, Thomas, Citrin, Deborah E., Kovacs, Joseph, Polis, Michael A., Rehm, Catherine A., Gorelick, Robert, Piatak, Michael, Keele, Brandon F., Kearney, Mary F., Coffin, John M., Hughes, Stephen H., Mellors, John W., Maldarelli, Frank

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The role of methylation in the intrinsic dynamics of B- and Z-DNA von Temiz, Nuri A, Donohue, Duncan E, Bacolla, Albino, Luke, Brian T, Collins, Jack R

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Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools von Cer, Regina Z, Donohue, Duncan E, Mudunuri, Uma S, Temiz, Nuri A, Loss, Michael A, Starner, Nathan J, Halusa, Goran N, Volfovsky, Natalia, Yi, Ming, Luke, Brian T, Bacolla, Albino, Collins, Jack R, Stephens, Robert M

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HIV infected CD4+ T cell clones are more stable than uninfected clones during long-term antiretroviral therapy von Guo, Shuang, Luke, Brian T, Henry, Amy R, Darko, Samuel, Brandt, Leah D, Su, Ling, Sun, David, Wells, Daria, Joseph, Kevin W, Demirov, Dimiter, Halvas, Elias K, Douek, Daniel C, Wu, Xiaolin, Mellors, John W, Hughes, Stephen H

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Acute and chronic plasma metabolomic and liver transcriptomic stress effects in a mouse model with features of post-traumatic stress disorder von Gautam, Aarti, D'Arpa, Peter, Donohue, Duncan E, Muhie, Seid, Chakraborty, Nabarun, Luke, Brian T, Grapov, Dmitry, Carroll, Erica E, Meyerhoff, James L, Hammamieh, Rasha, Jett, Marti

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Clones of infected cells arise early in HIV-infected individuals von Coffin, John M, Wells, David W, Zerbato, Jennifer M, Kuruc, Joann D, Guo, Shuang, Luke, Brian T, Eron, Joseph J, Bale, Michael, Spindler, Jonathan, Simonetti, Francesco R, Hill, Shawn, Kearney, Mary F, Maldarelli, Frank, Wu, Xiaolin, Mellors, John W, Hughes, Stephen H

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Whole exome sequencing in families at high risk for Hodgkin lymphoma: identification of a predisposing mutation in the KDR gene von Rotunno, Melissa, McMaster, Mary L, Boland, Joseph, Bass, Sara, Zhang, Xijun, Burdett, Laurie, Hicks, Belynda, Ravichandran, Sarangan, Luke, Brian T, Yeager, Meredith, Fontaine, Laura, Hyland, Paula L, Goldstein, Alisa M, Chanock, Stephen J, Caporaso, Neil E, Tucker, Margaret A, Goldin, Lynn R

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Longitudinal Assessment of BNT162b2- and mRNA-1273-Induced Anti-SARS-CoV-2 Spike IgG Levels and Avidity Following Three Doses of Vaccination von Bullock, Jr, Jimmie L, Hickey, Thomas E, Kemp, Troy J, Metz, Jordan, Loftus, Sarah, Haynesworth, Katarzyna, Castro, Nicholas, Luke, Brian T, Lowy, Douglas R, Pinto, Ligia A

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Electrostatically Driven Guanidinium Interaction Domains that Control Hydrogel-Mediated Protein Delivery In Vivo von Miller, Stephen E, Yamada, Yuji, Patel, Nimit, Suárez, Ernesto, Andrews, Caroline, Tau, Steven, Luke, Brian T, Cachau, Raul E, Schneider, Joel P

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Guanine holes are prominent targets for mutation in cancer and inherited disease von Bacolla, Albino, Temiz, Nuri A, Yi, Ming, Ivanic, Joseph, Cer, Regina Z, Donohue, Duncan E, Ball, Edward V, Mudunuri, Uma S, Wang, Guliang, Jain, Aklank, Volfovsky, Natalia, Luke, Brian T, Stephens, Robert M, Cooper, David N, Collins, Jack R, Vasquez, Karen M

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Knowledge and theme discovery across very large biological data sets using distributed queries: a prototype combining unstructured and structured data von Mudunuri, Uma S, Khouja, Mohamad, Repetski, Stephen, Venkataraman, Girish, Che, Anney, Luke, Brian T, Girard, F Pascal, Stephens, Robert M

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The somatic autosomal mutation matrix in cancer genomes von Temiz, Nuri A., Donohue, Duncan E., Bacolla, Albino, Vasquez, Karen M., Cooper, David N., Mudunuri, Uma, Ivanic, Joseph, Cer, Regina Z., Yi, Ming, Stephens, Robert M., Collins, Jack R., Luke, Brian T.

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The Palm Subdomain-based Active Site is Internally Permuted in Viral RNA-dependent RNA Polymerases of an Ancient Lineage von Gorbalenya, Alexander E, Pringle, Fiona M, Zeddam, Jean-Louis, Luke, Brian T, Cameron, Craig E, Kalmakoff, James, Hanzlik, Terry N, Gordon, Karl H.J, Ward, Vernon K

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Polymorphism Interaction Analysis (PIA): a method for investigating complex gene-gene interactions von Mechanic, Leah E, Luke, Brian T, Goodman, Julie E, Chanock, Stephen J, Harris, Curtis C

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Somatic Genomics and Clinical Features of Lung Adenocarcinoma: A Retrospective Study von Shi, Jianxin, Hua, Xing, Zhu, Bin, Ravichandran, Sarangan, Wang, Mingyi, Nguyen, Cu, Brodie, Seth A, Palleschi, Alessandro, Alloisio, Marco, Pariscenti, Gianluca, Jones, Kristine, Zhou, Weiyin, Bouk, Aaron J, Boland, Joseph, Hicks, Belynda, Risch, Adam, Bennett, Hunter, Luke, Brian T, Song, Lei, Duan, Jubao, Liu, Pengyuan, Kohno, Takashi, Chen, Qingrong, Meerzaman, Daoud, Marconett, Crystal, Laird-Offringa, Ite, Mills, Ian, Caporaso, Neil E, Gail, Mitchell H, Pesatori, Angela C, Consonni, Dario, Bertazzi, Pier Alberto, Chanock, Stephen J, Landi, Maria Teresa

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Increased Serum Levels of Complement C3a Anaphylatoxin Indicate the Presence of Colorectal Tumors von Habermann, Jens K., Roblick, Uwe J., Luke, Brian T., Prieto, Darue A., Finlay, William J.J., Podust, Vladimir N., Roman, John M., Oevermann, Elisabeth, Schiedeck, Thomas, Homann, Nils, Duchrow, Michael, Conrads, Thomas P., Veenstra, Timothy D., Burt, Stanley K., Bruch, Hans–Peter, Auer, Gert, Ried, Thomas

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Comparative proteomics of a model MCF10A-KRasG12V cell line reveals a distinct molecular signature of the KRasG12V cell surface von Ye, Xiaoying, Chan, King C, Waters, Andrew M, Bess, Matthew, Harned, Adam, Wei, Bih-Rong, Loncarek, Jadranka, Luke, Brian T, Orsburn, Benjamin C, Hollinger, Bradley D, Stephens, Robert M, Bagni, Rachel, Martinko, Alex, Wells, James A, Nissley, Dwight V, McCormick, Frank, Whiteley, Gordon, Blonder, Josip

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LEDGF/p75 interacts with mRNA splicing factors and targets HIV-1 integration to highly spliced genes von Singh, Parmit Kumar, Plumb, Matthew R, Ferris, Andrea L, Iben, James R, Wu, Xiaolin, Fadel, Hind J, Luke, Brian T, Esnault, Caroline, Poeschla, Eric M, Hughes, Stephen H, Kvaratskhelia, Mamuka, Levin, Henry L

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MoCoLo: a testing framework for motif co-localization von Xu, Qi, del Mundo, Imee M A, Zewail-Foote, Maha, Luke, Brian T, Vasquez, Karen M, Kowalski, Jeanne

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