Clonal expansion and epigenetic inheritance of long-lasting NK cell memory von Rückert, Timo, Lareau, Caleb A., Mashreghi, Mir-Farzin, Ludwig, Leif S., Romagnani, Chiara

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Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells von Mimitou, Eleni P., Lareau, Caleb A., Chen, Kelvin Y., Zorzetto-Fernandes, Andre L., Hao, Yuhan, Takeshima, Yusuke, Luo, Wendy, Huang, Tse-Shun, Yeung, Bertrand Z., Papalexi, Efthymia, Thakore, Pratiksha I., Kibayashi, Tatsuya, Wing, James Badger, Hata, Mayu, Satija, Rahul, Nazor, Kristopher L., Sakaguchi, Shimon, Ludwig, Leif S., Sankaran, Vijay G., Regev, Aviv, Smibert, Peter

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Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics von Ludwig, Leif S., Lareau, Caleb A., Ulirsch, Jacob C., Christian, Elena, Muus, Christoph, Li, Lauren H., Pelka, Karin, Ge, Will, Oren, Yaara, Brack, Alison, Law, Travis, Rodman, Christopher, Chen, Jonathan H., Boland, Genevieve M., Hacohen, Nir, Rozenblatt-Rosen, Orit, Aryee, Martin J., Buenrostro, Jason D., Regev, Aviv, Sankaran, Vijay G.

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Single-cell multi-omics and lineage tracing to dissect cell fate decision-making von Haghverdi, Laleh, Ludwig, Leif S.

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Single-cell profiling of proteins and chromatin accessibility using PHAGE-ATAC von Fiskin, Evgenij, Lareau, Caleb A., Ludwig, Leif S., Eraslan, Gökcen, Liu, Feimei, Ring, Aaron M., Xavier, Ramnik J., Regev, Aviv

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Interrogation of human hematopoiesis at single-cell and single-variant resolution von Ulirsch, Jacob C., Lareau, Caleb A., Bao, Erik L., Ludwig, Leif S., Guo, Michael H., Benner, Christian, Satpathy, Ansuman T., Kartha, Vinay K., Salem, Rany M., Hirschhorn, Joel N., Finucane, Hilary K., Aryee, Martin J., Buenrostro, Jason D., Sankaran, Vijay G.

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Transcriptional States and Chromatin Accessibility Underlying Human Erythropoiesis von Ludwig, Leif S, Lareau, Caleb A, Bao, Erik L, Nandakumar, Satish K, Muus, Christoph, Ulirsch, Jacob C, Chowdhary, Kaitavjeet, Buenrostro, Jason D, Mohandas, Narla, An, Xiuli, Aryee, Martin J, Regev, Aviv, Sankaran, Vijay G

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cDNA-detector: detection and removal of cDNA contamination in DNA sequencing libraries von Qi, Meifang, Nayar, Utthara, Ludwig, Leif S, Wagle, Nikhil, Rheinbay, Esther

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Editorial: Lineage tracing, hematopoietic stem cell and immune cell dynamics von Lareau, Caleb A., Romagnani, Chiara, Ludwig, Leif S.

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Insight into GATA1 transcriptional activity through interrogation of cis elements disrupted in human erythroid disorders von Wakabayashi, Aoi, Ulirsch, Jacob C., Ludwig, Leif S., Fiorini, Claudia, Yasuda, Makiko, Choudhuri, Avik, McDonel, Patrick, Zon, Leonard I., Sankaran, Vijay G.

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Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic features von Ray, John P., de Boer, Carl G., Fulco, Charles P., Lareau, Caleb A., Kanai, Masahiro, Ulirsch, Jacob C., Tewhey, Ryan, Ludwig, Leif S., Reilly, Steven K., Bergman, Drew T., Engreitz, Jesse M., Issner, Robbyn, Finucane, Hilary K., Lander, Eric S., Regev, Aviv, Hacohen, Nir

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Cyclin D3 coordinates the cell cycle during differentiation to regulate erythrocyte size and number von Sankaran, Vijay G, Ludwig, Leif S, Sicinska, Ewa, Xu, Jian, Bauer, Daniel E, Eng, Jennifer C, Patterson, Heide Christine, Metcalf, Ryan A, Natkunam, Yasodha, Orkin, Stuart H, Sicinski, Piotr, Lander, Eric S, Lodish, Harvey F

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Impaired human hematopoiesis due to a cryptic intronic GATA1 splicing mutation von Abdulhay, Nour J, Fiorini, Claudia, Verboon, Jeffrey M, Ludwig, Leif S, Ulirsch, Jacob C, Zieger, Barbara, Lareau, Caleb A, Mi, Xiaoli, Roy, Anindita, Obeng, Esther A, Erlacher, Miriam, Gupta, Namrata, Gabriel, Stacey B, Ebert, Benjamin L, Niemeyer, Charlotte M, Khoriaty, Rami N, Ancliff, Philip, Gazda, Hanna T, Wlodarski, Marcin W, Sankaran, Vijay G

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Targeted Application of Human Genetic Variation Can Improve Red Blood Cell Production from Stem Cells von Giani, Felix C., Fiorini, Claudia, Wakabayashi, Aoi, Ludwig, Leif S., Salem, Rany M., Jobaliya, Chintan D., Regan, Stephanie N., Ulirsch, Jacob C., Liang, Ge, Steinberg-Shemer, Orna, Guo, Michael H., Esko, Tõnu, Tong, Wei, Brugnara, Carlo, Hirschhorn, Joel N., Weiss, Mitchell J., Zon, Leonard I., Chou, Stella T., French, Deborah L., Musunuru, Kiran, Sankaran, Vijay G.

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The next generation of in situ multi-omics von Salla, Maren, Penkert, Klara, Ludwig, Leif S

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Mitochondrial genetics through the lens of single-cell multi-omics von Nitsch, Lena, Lareau, Caleb A., Ludwig, Leif S.

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Longitudinal assessment of clonal mosaicism in human hematopoiesis via mitochondrial mutation tracking von Lareau, Caleb A., Ludwig, Leif S., Sankaran, Vijay G.

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Gene-centric functional dissection of human genetic variation uncovers regulators of hematopoiesis von Nandakumar, Satish K, McFarland, Sean K, Mateyka, Laura M, Lareau, Caleb A, Ulirsch, Jacob C, Ludwig, Leif S, Agarwal, Gaurav, Engreitz, Jesse M, Przychodzen, Bartlomiej, McConkey, Marie, Cowley, Glenn S, Doench, John G, Maciejewski, Jaroslaw P, Ebert, Benjamin L, Root, David E, Sankaran, Vijay G

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Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling von Lareau, Caleb A., Ludwig, Leif S., Muus, Christoph, Gohil, Satyen H., Zhao, Tongtong, Chiang, Zachary, Pelka, Karin, Verboon, Jeffrey M., Luo, Wendy, Christian, Elena, Rosebrock, Daniel, Getz, Gad, Boland, Genevieve M., Chen, Fei, Buenrostro, Jason D., Hacohen, Nir, Wu, Catherine J., Aryee, Martin J., Regev, Aviv, Sankaran, Vijay G.

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Purifying Selection against Pathogenic Mitochondrial DNA in Human T Cells von Walker, Melissa A, Lareau, Caleb A, Ludwig, Leif S, Karaa, Amel, Sankaran, Vijay G, Regev, Aviv, Mootha, Vamsi K

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