Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3 von Li, Junhao, Pinto-Duarte, Antonio, Zander, Mark, Cuoco, Michael S, Lai, Chi-Yu, Osteen, Julia, Fang, Linjing, Luo, Chongyuan, Lucero, Jacinta D, Gomez-Castanon, Rosa, Nery, Joseph R, Silva-Garcia, Isai, Pang, Yan, Sejnowski, Terrence J, Powell, Susan B, Ecker, Joseph R, Mukamel, Eran A, Behrens, M Margarita

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Adolescent GBR12909 exposure induces oxidative stress, disrupts parvalbumin-positive interneurons, and leads to hyperactivity and impulsivity in adult mice von Khan, Asma, de Jong, Loek A.W, Kamenski, Mary E, Higa, Kerin K, Lucero, Jacinta D, Young, Jared W, Behrens, M. Margarita, Powell, Susan B

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Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes von Xie, Fangming, Armand, Ethan J., Yao, Zizhen, Liu, Hanqing, Bartlett, Anna, Behrens, M. Margarita, Li, Yang Eric, Lucero, Jacinta D., Luo, Chongyuan, Nery, Joseph R., Pinto-Duarte, Antonio, Poirion, Olivier B., Preissl, Sebastian, Rivkin, Angeline C., Tasic, Bosiljka, Zeng, Hongkui, Ren, Bing, Ecker, Joseph R., Mukamel, Eran A.

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Comparative cellular analysis of motor cortex in human, marmoset and mouse von Bakken, Trygve E., Jorstad, Nikolas L., Hu, Qiwen, Lake, Blue B., Tian, Wei, Kalmbach, Brian E., Crow, Megan, Hodge, Rebecca D., Krienen, Fenna M., Sorensen, Staci A., Eggermont, Jeroen, Yao, Zizhen, Aevermann, Brian D., Aldridge, Andrew I., Bartlett, Anna, Bertagnolli, Darren, Casper, Tamara, Crichton, Kirsten, Daigle, Tanya L., Dalley, Rachel, Dembrow, Nikolai, Diep, Dinh, Ding, Song-Lin, Fang, Rongxin, Fischer, Stephan, Goldman, Melissa, Goldy, Jeff, Graybuck, Lucas T., Herb, Brian R., Hou, Xiaomeng, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, Li, Yang Eric, Liu, Christine S., Lucero, Jacinta D., Mahurkar, Anup, McMillen, Delissa, Miller, Jeremy A., Moussa, Marmar, Nery, Joseph R., Nicovich, Philip R., Niu, Sheng-Yong, Orvis, Joshua, Osteen, Julia K., Owen, Scott, Palmer, Carter R., Pham, Thanh, Plongthongkum, Nongluk, Poirion, Olivier, Reed, Nora M., Rimorin, Christine, Rivkin, Angeline, Romanow, William J., Sedeño-Cortés, Adriana E., Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Wang, Xinxin, Xie, Fangming, Yanny, Anna Marie, Zhang, Renee, Ament, Seth A., Behrens, M. Margarita, Bravo, Hector Corrada, Chun, Jerold, Dobin, Alexander, Gillis, Jesse, Hertzano, Ronna, Hof, Patrick R., Höllt, Thomas, Horwitz, Gregory D., Keene, C. Dirk, Kharchenko, Peter V., Lelieveldt, Boudewijn P., Luo, Chongyuan, Mukamel, Eran A., Pinto-Duarte, António, Preissl, Sebastian, Regev, Aviv, Ren, Bing, Scheuermann, Richard H., Smith, Kimberly, Spain, William J., White, Owen R., Koch, Christof, Hawrylycz, Michael, Tasic, Bosiljka, Macosko, Evan Z., McCarroll, Steven A., Ting, Jonathan T., Zeng, Hongkui, Zhang, Kun, Feng, Guoping, Ecker, Joseph R., Linnarsson, Sten, Lein, Ed S.

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A multimodal cell census and atlas of the mammalian primary motor cortex von Callaway, Edward M., Dong, Hong-Wei, Ecker, Joseph R., Hawrylycz, Michael J., Huang, Z. Josh, Lein, Ed S., Ngai, John, Osten, Pavel, Ren, Bing, Tolias, Andreas Savas, White, Owen, Zeng, Hongkui, Zhuang, Xiaowei, Ascoli, Giorgio A., Behrens, M. Margarita, Chun, Jerold, Feng, Guoping, Gee, James C., Ghosh, Satrajit S., Halchenko, Yaroslav O., Hertzano, Ronna, Lim, Byung Kook, Martone, Maryann E., Ng, Lydia, Pachter, Lior, Ropelewski, Alexander J., Tickle, Timothy L., Yang, X. William, Zhang, Kun, Bakken, Trygve E., Berens, Philipp, Daigle, Tanya L., Harris, Julie A., Jorstad, Nikolas L., Kalmbach, Brian E., Kobak, Dmitry, Li, Yang Eric, Liu, Hanqing, Matho, Katherine S., Mukamel, Eran A., Naeemi, Maitham, Scala, Federico, Tan, Pengcheng, Ting, Jonathan T., Xie, Fangming, Zhang, Meng, Zhang, Zhuzhu, Zhou, Jingtian, Zingg, Brian, Bertagnolli, Darren, Casper, Tamara, Crichton, Kirsten, Dee, Nick, Diep, Dinh, Ding, Song-Lin, Dong, Weixiu, Dougherty, Elizabeth L., Fong, Olivia, Goldman, Melissa, Goldy, Jeff, Hodge, Rebecca D., Hu, Lijuan, Keene, C. Dirk, Krienen, Fenna M., Kroll, Matthew, Lake, Blue B., Lathia, Kanan, Linnarsson, Sten, Liu, Christine S., Macosko, Evan Z., McCarroll, Steven A., McMillen, Delissa, Nadaf, Naeem M., Thuc Nghi Nguyen, Palmer, Carter R., Thanh Pham, Plongthongkum, Nongluk, Reed, Nora M., Regev, Aviv, Rimorin, Christine, Romanow, William J., Savoia, Steven, Siletti, Kimberly, Smith, Kimberly, Sulc, Josef, Tasic, Bosiljka, Tieu, Michael, Torkelson, Amy, Tung, Herman, van Velthoven, Cindy T. J., Vanderburg, Charles R., Yanny, Anna Marie, Fang, Rongxin, Hou, Xiaomeng, Lucero, Jacinta D., Osteen, Julia K., Pinto-Duarte, Antonio, Poirion, Olivier, Preissl, Sebastian, Wang, Xinxin

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A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex von Yao, Zizhen, Liu, Hanqing, Xie, Fangming, Fischer, Stephan, Adkins, Ricky S., Aldridge, Andrew I., Ament, Seth A., Bartlett, Anna, Behrens, M. Margarita, Van den Berge, Koen, Bertagnolli, Darren, de Bézieux, Hector Roux, Biancalani, Tommaso, Booeshaghi, A. Sina, Bravo, Héctor Corrada, Casper, Tamara, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather, Crichton, Kirsten, Crow, Megan, Dee, Nick, Dougherty, Elizabeth L., Doyle, Wayne I., Dudoit, Sandrine, Fang, Rongxin, Felix, Victor, Fong, Olivia, Giglio, Michelle, Goldy, Jeff, Hawrylycz, Mike, Herb, Brian R., Hertzano, Ronna, Hou, Xiaomeng, Hu, Qiwen, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, Li, Yang Eric, Lucero, Jacinta D., Luo, Chongyuan, Mahurkar, Anup, McMillen, Delissa, Nadaf, Naeem M., Nery, Joseph R., Nguyen, Thuc Nghi, Niu, Sheng-Yong, Ntranos, Vasilis, Orvis, Joshua, Osteen, Julia K., Pham, Thanh, Pinto-Duarte, Antonio, Poirion, Olivier, Preissl, Sebastian, Purdom, Elizabeth, Rimorin, Christine, Risso, Davide, Rivkin, Angeline C., Smith, Kimberly, Street, Kelly, Sulc, Josef, Svensson, Valentine, Tieu, Michael, Torkelson, Amy, Tung, Herman, Vaishnav, Eeshit Dhaval, Vanderburg, Charles R., van Velthoven, Cindy, Wang, Xinxin, White, Owen R., Huang, Z. Josh, Kharchenko, Peter V., Pachter, Lior, Ngai, John, Regev, Aviv, Tasic, Bosiljka, Welch, Joshua D., Gillis, Jesse, Macosko, Evan Z., Ren, Bing, Ecker, Joseph R., Zeng, Hongkui, Mukamel, Eran A.

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Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse von Bakken, Trygve E., Jorstad, Nikolas L., Hu, Qiwen, Lake, Blue B., Tian, Wei, Kalmbach, Brian E., Crow, Megan, Hodge, Rebecca D., Krienen, Fenna M., Sorensen, Staci A., Eggermont, Jeroen, Yao, Zizhen, Aevermann, Brian D., Aldridge, Andrew I., Bartlett, Anna, Bertagnolli, Darren, Casper, Tamara, Crichton, Kirsten, Daigle, Tanya L., Dalley, Rachel, Dembrow, Nikolai, Diep, Dinh, Ding, Song-Lin, Fang, Rongxin, Fischer, Stephan, Goldman, Melissa, Goldy, Jeff, Graybuck, Lucas T., Herb, Brian R., Hou, Xiaomeng, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, Li, Yang Eric, Liu, Christine S., Lucero, Jacinta D., Mahurkar, Anup, McMillen, Delissa, Miller, Jeremy A., Moussa, Marmar, Nery, Joseph R., Nicovich, Philip R., Niu, Sheng-Yong, Orvis, Joshua, Osteen, Julia K., Owen, Scott, Palmer, Carter R., Pham, Thanh, Plongthongkum, Nongluk, Poirion, Olivier, Reed, Nora M., Rimorin, Christine, Rivkin, Angeline, Romanow, William J., Sedeño-Cortés, Adriana E., Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Wang, Xinxin, Xie, Fangming, Yanny, Anna Marie, Zhang, Renee, Ament, Seth A., Behrens, M. Margarita, Bravo, Hector Corrada, Chun, Jerold, Dobin, Alexander, Gillis, Jesse, Hertzano, Ronna, Hof, Patrick R., Höllt, Thomas, Horwitz, Gregory D., Keene, C. Dirk, Kharchenko, Peter V., Lelieveldt, Boudewijn P., Luo, Chongyuan, Mukamel, Eran A., Pinto-Duarte, António, Preiss, Sebastian, Regev, Aviv, Ren, Bing, Scheuermann, Richard H., Smith, Kimberly, Spain, William J., White, Owen R., Koch, Christof, Hawrylycz, Michael, Tasic, Bosiljka, Macosko, Evan Z., McCarroll, Steven A., Ting, Jonathan T., Zeng, Hongkui, Zhang, Kun, Feng, Guoping, Ecker, Joseph R., Linnarsson, Sten, Lein, Ed S.

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A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex von Yao, Zizhen, Liu, Hanqing, Xie, Fangming, Fischer, Stephan, Adkins, Ricky S, Aldridge, Andrew I, Ament, Seth A, Bartlett, Anna, Behrens, M. Margarita, Van den Berge, Koen, Bertagnolli, Darren, de Bézieux, Hector Roux, Biancalani, Tommaso, Booeshaghi, A. Sina, Bravo, Héctor Corrada, Casper, Tamara, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather, Crichton, Kirsten, Crow, Megan, Dee, Nick, Dougherty, Elizabeth L, Doyle, Wayne I, Dudoit, Sandrine, Fang, Rongxin, Felix, Victor, Fong, Olivia, Giglio, Michelle, Goldy, Jeff, Hawrylycz, Mike, Herb, Brian R, Hertzano, Ronna, Hou, Xiaomeng, Hu, Qiwen, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, Li, Yang Eric, Lucero, Jacinta D, Luo, Chongyuan, Mahurkar, Anup, McMillen, Delissa, Nadaf, Naeem M, Nery, Joseph R, Nguyen, Thuc Nghi, Niu, Sheng-Yong, Ntranos, Vasilis, Orvis, Joshua, Osteen, Julia K, Pham, Thanh, Pinto-Duarte, Antonio, Poirion, Olivier, Preissl, Sebastian, Purdom, Elizabeth, Rimorin, Christine, Risso, Davide, Rivkin, Angeline C, Smith, Kimberly, Street, Kelly, Sulc, Josef, Svensson, Valentine, Tieu, Michael, Torkelson, Amy, Tung, Herman, Vaishnav, Eeshit Dhaval, Vanderburg, Charles R, van Velthoven, Cindy, Wang, Xinxin, White, Owen R, Huang, Z. Josh, Kharchenko, Peter V, Pachter, Lior, Ngai, John, Regev, Aviv, Tasic, Bosiljka, Welch, Joshua D, Gillis, Jesse, Macosko, Evan Z, Ren, Bing, Ecker, Joseph R, Zeng, Hongkui, Mukamel, Eran A

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A multimodal cell census and atlas of the mammalian primary motor cortex von Dong, Hong-Wei, Ecker, Joseph R, Hawrylycz, Michael J, Huang, Z. Josh, Lein, Ed S, Tolias, Andreas Savas, Zhuang, Xiaowei, Ascoli, Giorgio A, Feng, Guoping, Ghosh, Satrajit S, Ng, Lydia, Kobak, Dmitry, Liu, Hanqing, Scala, Federico, Tan, Pengcheng, Zhang, Zhuzhu, Zhou, Jingtian, Zingg, Brian, Bertagnolli, Darren, Dee, Nick, Ding, Song-Lin, Dong, Weixiu, Fong, Olivia, Hu, Lijuan, Lake, Blue B, Linnarsson, Sten, McMillen, Delissa, Nadaf, Naeem M, Palmer, Carter R, Reed, Nora M, Romanow, William J, Sulc, Josef, Tasic, Bosiljka, Vanderburg, Charles R, Pinto-Duarte, Antonio, Poirion, Olivier, Aldridge, Andrew I, Boggeman, Lara, O’Connor, Carolyn, Castanon, Rosa G, Nery, Joseph R, Nunn, Michael, Dominguez, Bertha, Ito-Cole, Tony, Lee, Kuo-Fen, Smith, Jared B, Vu, Minh, Williams, Elora, Biancalani, Tommaso, Dudoit, Sandrine, Hu, Qiwen, Ntranos, Vasilis, Welch, Joshua D, Bateup, Helen S, Foster, Nicholas N, Hintiryan, Houri, Hirokawa, Karla E, Li, Anan, Li, Xiangning, Luo, Qingming, Muñoz-Castañeda, Rodrigo, Stafford, David A, Jiang, Shengdian, Kuang, Xiuli, Shen, Elise, Wang, Peng, Zhao, Xuan, Narasimhan, Arun, Palaniswamy, Ramesh, Huilgol, Dhananjay, Xie, Peng, Xiong, Feng, Bernabucci, Matteo, Bernaerts, Yves, Ko, Andrew L, Mulherkar, Shalaka, Owen, Scott F, Allen, Shona, Hockemeyer, Dirk, Veldman, Matthew B, Adkins, Ricky S, Ament, Seth A, Bravo, Héctor Corrada, Chatterjee, Apaala, Colantuoni, Carlo, Crabtree, Jonathan, Felix, Victor, Nickel, Lance, Schor, Michael, Dichter, Benjamin, Konwar, Kishori, Thompson, Carol, BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, [missing], BICCN contributing principal investigators, [missing], Omics data analysis, [missing], OLST/STPT and other data generation, [missing], Spatially resolved single-cell transcriptomics (MERFISH), [missing], Transgenic tools, [missing], DANDI archive, [missing], Brain Cell Data Center (BCDC), [missing]

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Global Epigenomic Reconfiguration During Mammalian Brain Development von Lister, Ryan, Mukamel, Eran A., Nery, Joseph R., Urich, Mark, Puddifoot, Clare A., Johnson, Nicholas D., Lucero, Jacinta, Huang, Yun, Dwork, Andrew J., Schultz, Matthew D., Yu, Miao, Tonti-Filippini, Julian, Heyn, Holger, Hu, Shijun, Wu, Joseph C., Rao, Anjana, Esteller, Manel, He, Chuan, Haghighi, Fatemeh G., Sejnowski, Terrence J., Behrens, M. Margarita, Ecker, Joseph R.

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Single nucleus multi-omics identifies human cortical cell regulatory genome diversity von Luo, Chongyuan, Liu, Hanqing, Xie, Fangming, Armand, Ethan J., Siletti, Kimberly, Bakken, Trygve E., Fang, Rongxin, Doyle, Wayne I., Stuart, Tim, Hodge, Rebecca D., Hu, Lijuan, Wang, Bang-An, Zhang, Zhuzhu, Preissl, Sebastian, Lee, Dong-Sung, Zhou, Jingtian, Niu, Sheng-Yong, Castanon, Rosa, Bartlett, Anna, Rivkin, Angeline, Wang, Xinxin, Lucero, Jacinta, Nery, Joseph R., Davis, David A., Mash, Deborah C., Satija, Rahul, Dixon, Jesse R., Linnarsson, Sten, Lein, Ed, Behrens, M. Margarita, Ren, Bing, Mukamel, Eran A., Ecker, Joseph R.

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A comparative atlas of single-cell chromatin accessibility in the human brain von Li, Yang Eric, Preissl, Sebastian, Miller, Michael, Johnson, Nicholas D, Wang, Zihan, Jiao, Henry, Zhu, Chenxu, Wang, Zhaoning, Xie, Yang, Poirion, Olivier, Kern, Colin, Pinto-Duarte, Antonio, Tian, Wei, Siletti, Kimberly, Emerson, Nora, Osteen, Julia, Lucero, Jacinta, Lin, Lin, Yang, Qian, Zhu, Quan, Zemke, Nathan, Espinoza, Sarah, Yanny, Anna Marie, Nyhus, Julie, Dee, Nick, Casper, Tamara, Shapovalova, Nadiya, Hirschstein, Daniel, Hodge, Rebecca D, Linnarsson, Sten, Bakken, Trygve, Levi, Boaz, Keene, C Dirk, Shang, Jingbo, Lein, Ed, Wang, Allen, Behrens, M Margarita, Ecker, Joseph R, Ren, Bing

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Single-cell DNA methylation and 3D genome architecture in the human brain von Tian, Wei, Zhou, Jingtian, Bartlett, Anna, Zeng, Qiurui, Liu, Hanqing, Castanon, Rosa G, Kenworthy, Mia, Altshul, Jordan, Valadon, Cynthia, Aldridge, Andrew, Nery, Joseph R, Chen, Huaming, Xu, Jiaying, Johnson, Nicholas D, Lucero, Jacinta, Osteen, Julia K, Emerson, Nora, Rink, Jon, Lee, Jasper, Li, Yang E, Siletti, Kimberly, Liem, Michelle, Claffey, Naomi, O'Connor, Carolyn, Yanny, Anna Marie, Nyhus, Julie, Dee, Nick, Casper, Tamara, Shapovalova, Nadiya, Hirschstein, Daniel, Ding, Song-Lin, Hodge, Rebecca, Levi, Boaz P, Keene, C Dirk, Linnarsson, Sten, Lein, Ed, Ren, Bing, Behrens, M Margarita, Ecker, Joseph R

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Rapid Loss of Microvascular Integrin Expression During Focal Brain Ischemia Reflects Neuron Injury von Tagaya, Masafumi, Haring, Hans-Peter, Stuiver, Ingrid, Wagner, Simone, Abumiya, Takeo, Lucero, Jacinta, Lee, Pauline, Copeland, Brian R., Seiffert, Dietmar, del Zoppo, Gregory J.

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Activation Systems for Latent Matrix Metalloproteinase-2 Are Upregulated Immediately After Focal Cerebral Ischemia von Chang, Dae-Il, Hosomi, Naohisa, Lucero, Jacinta, Heo, Ji-Hoe, Abumiya, Takeo, Mazar, Andrew P., del Zoppo, Gregory J.

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Prolonged α-Tocopherol Deficiency Decreases Oxidative Stress and Unmasks α-Tocopherol-dependent Regulation of Mitochondrial Function in the Brain von Cuddihy, Sarah L., Ali, Sameh S., Musiek, Erik S., Lucero, Jacinta, Kopp, Sarah J., Morrow, Jason D., Dugan, Laura L.

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Global epigenomic reconfiguration during mammalian brain development von Lister, Ryan, Mukamel, Eran A, Nery, Joseph R, Urich, Mark, Puddifoot, Clare A, Johnson, Nicholas D, Lucero, Jacinta, Huang, Yun, Dwork, Andrew J, Schultz, Matthew D, Yu, Miao, Tonti Filippini, Julian, Heyn, Holger, Hu, Shijun, Wu, Joseph C, Rao, Anjana, Esteller, Manel, He, Chuan, Haghighi, Fatemeh G, Sejnowski, Terrence J, Behrens, M. Margarita, Ecker, Joseph R

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Global epigenomic reconfiguration during mammalian brain development von Lister, Ryan, Mukamel, Eran A, Nery, Joseph R, Urich, Mark, Puddifoot, Clare A, Johnson, Nicholas D, Lucero, Jacinta, Huang, Yun, Dwork, Andrew J, Schultz, Matthew D, Yu, Miao, Tonti Filippini, Julian, Heyn, Holger, Hu, Shijun, Wu, Joseph C, Rao, Anjana, Esteller, Manel, He, Chuan, Haghighi, Fatemeh G, Sejnowski, Terrence J, Behrens, M. Margarita, Ecker, Joseph R

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Prolonged α-Tocopherol Deficiency Decreases Oxidative Stress and Unmasks α-Tocopherol-dependent Regulation of Mitochondrial Function in the Brain von Sarah L. Cuddihy, Sameh S. Ali, Erik S. Musiek, Jacinta Lucero, Sarah J. Kopp, Jason D. Morrow, Laura L. Dugan

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MIGHTEE-\HI: Possible interactions with the galaxy NGC~895 von Namumba, Brenda, Román, Javier, Jesus Falcon Barroso, Knapen, Johan H, Ianjamasimanana Roger, Naluminsa, Elizabeth, Jozsa, Gyula I G, Korsaga, Marie, Maddox, Natasha, Frank, Brad, Sikhosana, Sinenhlanhla, Legodi, Samuel, Carignan, Claude, Ponomareva, Anastasia A, Jarrett, Tom, Lucero, Danielle, Smirnov, Oleg M, Thijs van der Hulst, Pisano, D J, Malek, kasia, Marchetti, Lucia, Vaccari, Mattia, Jarvis, Matt, Baes, Maarten, Meyer, Martin, Adams, Elizabeth A K, Delhaize, Jacinta, Chen, Hao, Rajohnson, Sambatriniaina, Kurapati, Sushma, Heywood, Ian, Verdes-Montenegro, Lourdes

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