VEGA is an interpretable generative model for inferring biological network activity in single-cell transcriptomics von Seninge, Lucas, Anastopoulos, Ioannis, Ding, Hongxu, Stuart, Joshua

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Associating transcription factors to single-cell trajectories with DREAMIT von Maulding, Nathan D, Seninge, Lucas, Stuart, Joshua M

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The manatee variational autoencoder model for predicting gene expression alterations caused by transcription factor perturbations von Yang, Ying, Seninge, Lucas, Wang, Ziyuan, Oro, Anthony, Stuart, Joshua M., Ding, Hongxu

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lincRNA-Cox2 Functions to Regulate Inflammation in Alveolar Macrophages during Acute Lung Injury von Robinson, Elektra Kantzari, Worthington, Atesh, Poscablo, Donna, Shapleigh, Barbara, Salih, Mays Mohammed, Halasz, Haley, Seninge, Lucas, Mosqueira, Benny, Smaliy, Valeriya, Forsberg, E Camilla, Carpenter, Susan

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Prioritizing transcriptional factors in gene regulatory networks with PageRank von Ding, Hongxu, Yang, Ying, Xue, Yuanqing, Seninge, Lucas, Gong, Henry, Safavi, Rojin, Califano, Andrea, Stuart, Joshua M.

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Identification of a differentiation stall in epithelial mesenchymal transition in histone H3–mutant diffuse midline glioma von Sanders, Lauren M, Cheney, Allison, Seninge, Lucas, van den Bout, Anouk, Chen, Marissa, Beale, Holly C, Kephart, Ellen Towle, Pfeil, Jacob, Learned, Katrina, Lyle, A Geoffrey, Bjork, Isabel, Haussler, David, Salama, Sofie R, Vaske, Olena M

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UCSC Cell Browser: visualize your single-cell data von Speir, Matthew L, Bhaduri, Aparna, Markov, Nikolay S, Moreno, Pablo, Nowakowski, Tomasz J, Papatheodorou, Irene, Pollen, Alex A, Raney, Brian J, Seninge, Lucas, Kent, W James, Haeussler, Maximilian

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Abstract 6154: H3K27M gliomas are characterized by a stall in the epithelial-mesenchymal transition von CHENEY, ALLISON R., Sanders, Lauren M., Seninge, Lucas, Beale, Holly C., Kephart, Ellen Towle, Pfeil, Jacob, Learned, Katrina, Lyle, A. Geoffrey, Bjork, Isabel, Haussler, David, Salama, Sofie R., Vaske, Olena M.

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Abstract B06: Candidate differentiation stall in epithelial mesenchymal transition in H3K27M diffuse midline glioma von Cheney, Allison R., Sanders, Lauren M., Seninge, Lucas, Beale, Holly C., Kephart, Ellen Towle, Pfeil, Jacob, Learned, Katrina, Lyle, A. Geoffrey, Bjork, Isabel, Haussler, David, Salama, Sofie R., Vaske, Olena M.

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PREDICTING GENE EXPRESSION ALTERATIONS CAUSED BY PERTURBATIONS OF TRANSCRIPTION FACTORS von DING, Hongxu, SENINGE, Lucas, STUART, Joshua

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Additional file 2 of Associating transcription factors to single-cell trajectories with DREAMIT von Maulding, Nathan D., Seninge, Lucas, Stuart, Joshua M.

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Supporting data for "Identification of a differentiation stall in epithelial mesenchymal transition in histone H3 mutant diffuse midline glioma" von Lauren, Sanders M, Allison, Cheney, Lucas, Seninge, Anouk, Van Den Bout, Marissa, Chen, Holly, Beale C, Kephart Towle Ellen, Jacob, Pfeil, Learned Katrina, A, Lyle Geoffrey, Bjork Isabel, Haussler David, Sofie, Salama R, Olena, Vaske M

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