Noncoding RNAs Serve as Diagnosis and Prognosis Biomarkers for Hepatocellular Carcinoma von Tan, Chang, Cao, Jingyi, Chen, Lu, Xi, Xiaochen, Wang, Siqi, Zhu, Yumin, Yang, Liuqing, Ma, Longteng, Wang, Dong, Yin, Jianhua, Zhang, Ti, John Lu, Zhi

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COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features von Hu, Long, Xu, Zhiyu, Hu, Boqin, Lu, Zhi John

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POSTAR3: an updated platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins von Zhao, Weihao, Zhang, Shang, Zhu, Yumin, Xi, Xiaochen, Bao, Pengfei, Ma, Ziyuan, Kapral, Thomas H, Chen, Shuyuan, Zagrovic, Bojan, Yang, Yucheng T, Lu, Zhi John

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RISE: a database of RNA interactome from sequencing experiments von Gong, Jing, Shao, Di, Xu, Kui, Lu, Zhipeng, Lu, Zhi John, Yang, Yucheng T, Zhang, Qiangfeng Cliff

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Microarray is an efficient tool for circRNA profiling von Li, Shasha, Teng, Shuaishuai, Xu, Junquan, Su, Guannan, Zhang, Yu, Zhao, Jianqing, Zhang, Suwei, Wang, Haiyan, Qin, Wenyan, Lu, Zhi John, Guo, Yong, Zhu, Qianyong, Wang, Dong

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POSTAR2: deciphering the post-transcriptional regulatory logics von Zhu, Yumin, Xu, Gang, Yang, Yucheng T, Xu, Zhiyu, Chen, Xinduo, Shi, Binbin, Xie, Daoxin, Lu, Zhi John, Wang, Pengyuan

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Characterization of stress‐responsive lncRNAs in Arabidopsis thaliana by integrating expression, epigenetic and structural features von Di, Chao, Yuan, Jiapei, Wu, Yue, Li, Jingrui, Lin, Huixin, Hu, Long, Zhang, Ting, Qi, Yijun, Gerstein, Mark B, Guo, Yan, Lu, Zhi John

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Recurrently deregulated lncRNAs in hepatocellular carcinoma von Yang, Yang, Chen, Lei, Gu, Jin, Zhang, Hanshuo, Yuan, Jiapei, Lian, Qiuyu, Lv, Guishuai, Wang, Siqi, Wu, Yang, Yang, Yu-Cheng T., Wang, Dongfang, Liu, Yang, Tang, Jing, Luo, Guijuan, Li, Yang, Hu, Long, Sun, Xinbao, Wang, Dong, Guo, Mingzhou, Xi, Qiaoran, Xi, Jianzhong, Wang, Hongyang, Zhang, Michael Q., Lu, Zhi John

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Critical roles of long noncoding RNAs in Drosophila spermatogenesis von Wen, Kejia, Yang, Lijuan, Xiong, Tuanlin, Di, Chao, Ma, Danhui, Wu, Menghua, Xue, Zhaoyu, Zhang, Xuedi, Long, Li, Zhang, Weimin, Zhang, Jiaying, Bi, Xiaolin, Dai, Junbiao, Zhang, Qiangfeng, Lu, Zhi John, Gao, Guanjun

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POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins von Hu, Boqin, Yang, Yu-Cheng T, Huang, Yiming, Zhu, Yumin, Lu, Zhi John

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Improved RNA secondary structure prediction by maximizing expected pair accuracy von Lu, Zhi John, Gloor, Jason W, Mathews, David H

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A Nodal enhanced micropeptide NEMEP regulates glucose uptake during mesendoderm differentiation of embryonic stem cells von Fu, Haipeng, Wang, Tingyu, Kong, Xiaohui, Yan, Kun, Yang, Yang, Cao, Jingyi, Yuan, Yafei, Wang, Nan, Kee, Kehkooi, Lu, Zhi John, Xi, Qiaoran

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RNA Biomarkers: Frontier of Precision Medicine for Cancer von Xi, Xiaochen, Li, Tianxiao, Huang, Yiming, Sun, Jiahui, Zhu, Yumin, Yang, Yang, Lu, Zhi John

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The phzA2-G2 transcript exhibits direct RsmA-mediated activation in Pseudomonas aeruginosa M18 von Ren, Bin, Shen, Huifeng, Lu, Zhi John, Liu, Haiming, Xu, Yuquan

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Systematic identification of synergistic drug pairs targeting HIV von Tan, Xu, Hu, Long, Luquette, Lovelace J, Gao, Geng, Liu, Yifang, Qu, Hongjing, Xi, Ruibin, Lu, Zhi John, Park, Peter J, Elledge, Stephen J

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Cancer type classification using plasma cell-free RNAs derived from human and microbes von Chen, Shanwen, Jin, Yunfan, Wang, Siqi, Xing, Shaozhen, Wu, Yingchao, Tao, Yuhuan, Ma, Yongchen, Zuo, Shuai, Liu, Xiaofan, Hu, Yichen, Chen, Hongyan, Luo, Yuandeng, Xia, Feng, Xie, Chuanming, Yin, Jianhua, Wang, Xin, Liu, Zhihua, Zhang, Ning, Zech Xu, Zhenjiang, Lu, Zhi John, Wang, Pengyuan

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Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans von Niu, Wei, Lu, Zhi John, Zhong, Mei, Sarov, Mihail, Murray, John I, Brdlik, Cathleen M, Janette, Judith, Chen, Chao, Alves, Pedro, Preston, Elicia, Slightham, Cindie, Jiang, Lixia, Hyman, Anthony A, Kim, Stuart K, Waterston, Robert H, Gerstein, Mark, Snyder, Michael, Reinke, Valerie

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Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons von Li, Jia, Sun, Lei, Peng, Xue-Liang, Yu, Xiao-Ming, Qi, Shao-Jun, Lu, Zhi John, Han, Jing-Dong J, Shen, Qin

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RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data von Wu, Yang, Qu, Rihao, Huang, Yiming, Shi, Binbin, Liu, Mengrong, Li, Yang, Lu, Zhi John

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Identification of high-confidence RNA regulatory elements by combinatorial classification of RNA-protein binding sites von Li, Yang Eric, Xiao, Mu, Shi, Binbin, Yang, Yu-Cheng T, Wang, Dong, Wang, Fei, Marcia, Marco, Lu, Zhi John

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