Distinct subtypes of diffuse large B-cell lymphoma defined by hypermutated genes von Alkodsi, Amjad, Cervera, Alejandra, Zhang, Kaiyang, Louhimo, Riku, Meriranta, Leo, Pasanen, Annika, Leivonen, Suvi-Katri, Holte, Harald, Leppä, Sirpa, Lehtonen, Rainer, Hautaniemi, Sampsa

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Language-Agnostic Reproducible Data Analysis Using Literate Programming von Vassilev, Boris, Louhimo, Riku, Ikonen, Elina, Hautaniemi, Sampsa

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MMP16 Mediates a Proteolytic Switch to Promote Cell-Cell Adhesion, Collagen Alignment, and Lymphatic Invasion in Melanoma von Tatti, Olga, Gucciardo, Erika, Pekkonen, Pirita, Holopainen, Tanja, Louhimo, Riku, Repo, Pauliina, Maliniemi, Pilvi, Lohi, Jouko, Rantanen, Ville, Hautaniemi, Sampsa, Alitalo, Kari, Ranki, Annamari, Ojala, Päivi M, Keski-Oja, Jorma, Lehti, Kaisa

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Deltex-1 mutations predict poor survival in diffuse large B-cell lymphoma von Meriranta, Leo, Pasanen, Annika, Louhimo, Riku, Cervera, Alejandra, Alkodsi, Amjad, Autio, Matias, Taskinen, Minna, Rantanen, Ville, Karjalainen-Lindsberg, Marja-Liisa, Holte, Harald, Delabie, Jan, Lehtonen, Rainer, Hautaniemi, Sampsa, Leppä, Sirpa

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Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme von Ovaska, Kristian, Laakso, Marko, Haapa-Paananen, Saija, Louhimo, Riku, Chen, Ping, Aittomäki, Viljami, Valo, Erkka, Núñez-Fontarnau, Javier, Rantanen, Ville, Karinen, Sirkku, Nousiainen, Kari, Lahesmaa-Korpinen, Anna-Maria, Miettinen, Minna, Saarinen, Lilli, Kohonen, Pekka, Wu, Jianmin, Westermarck, Jukka, Hautaniemi, Sampsa

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CNAmet: an R package for integrating copy number, methylation and expression data von LOUHIMO, Riku, HAUTANIEMI, Sampsa

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Data integration to prioritize drugs using genomics and curated data von Louhimo, Riku, Laakso, Marko, Belitskin, Denis, Klefström, Juha, Lehtonen, Rainer, Hautaniemi, Sampsa

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Deregulation of COMMD1 is associated with poor prognosis in diffuse large B-cell lymphoma von Taskinen, Minna, Louhimo, Riku, Koivula, Satu, Chen, Ping, Rantanen, Ville, Holte, Harald, Delabie, Jan, Karjalainen-Lindsberg, Marja-Liisa, Björkholm, Magnus, Fluge, Øystein, Pedersen, Lars Møller, Fjordén, Karin, Jerkeman, Mats, Eriksson, Mikael, Hautaniemi, Sampsa, Leppä, Sirpa

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Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors von Aure, Miriam Ragle, Leivonen, Suvi-Katri, Fleischer, Thomas, Zhu, Qian, Overgaard, Jens, Alsner, Jan, Tramm, Trine, Louhimo, Riku, Alnæs, Grethe I Grenaker, Perälä, Merja, Busato, Florence, Touleimat, Nizar, Tost, Jörg, Børresen-Dale, Anne-Lise, Hautaniemi, Sampsa, Troyanskaya, Olga G, Lingjærde, Ole Christian, Sahlberg, Kristine Kleivi, Kristensen, Vessela N

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Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data von Alkodsi, Amjad, Louhimo, Riku, Hautaniemi, Sampsa

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Comparative analysis of algorithms for integration of copy number and expression data von Louhimo, Riku, Lepikhova, Tatiana, Monni, Outi, Hautaniemi, Sampsa

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Identification of sample-specific regulations using integrative network level analysis von Liu, Chengyu, Louhimo, Riku, Laakso, Marko, Lehtonen, Rainer, Hautaniemi, Sampsa

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Drug-Sensitivity Screening and Genomic Characterization of 45 HPV-Negative Head and Neck Carcinoma Cell Lines for Novel Biomarkers of Drug Efficacy von Lepikhova, Tatiana, Karhemo, Piia-Riitta, Louhimo, Riku, Yadav, Bhagwan, Murumägi, Astrid, Kulesskiy, Evgeny, Kivento, Mikko, Sihto, Harri, Grénman, Reidar, Syrjänen, Stina M, Kallioniemi, Olli, Aittokallio, Tero, Wennerberg, Krister, Joensuu, Heikki, Monni, Outi

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Anduril 2: upgraded large-scale data integration framework von Cervera, Alejandra, Rantanen, Ville, Ovaska, Kristian, Laakso, Marko, Nuñez-Fontarnau, Javier, Alkodsi, Amjad, Casado, Julia, Facciotto, Chiara, Häkkinen, Antti, Louhimo, Riku, Karinen, Sirkku, Zhang, Kaiyang, Lavikka, Kari, Lyly, Lauri, Pal Singh, Maninder, Hautaniemi, Sampsa

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Identification of several potential chromatin binding sites of HOXB7 and its downstream target genes in breast cancer von Heinonen, Henna, Lepikhova, Tatiana, Sahu, Biswajyoti, Pehkonen, Henna, Pihlajamaa, Päivi, Louhimo, Riku, Gao, Ping, Wei, Gong‐Hong, Hautaniemi, Sampsa, Jänne, Olli A., Monni, Outi

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Somatic Mutations in E3 Ubiquitin Ligase Deltex 1 Are Associated with Survival in Diffuse Large B-Cell Lymphoma von Taskinen, Minna, Meriranta, Leo, Pasanen, Annika, Louhimo, Riku, Cervera, Alejandra, Karjalainen-Lindsberg, Marja-Liisa, Holte, Harald, Delabie, Jan, Lehtonen, Rainer, Hautaniemi, Sampsa, Leppä, Sirpa

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Mitkä tekijät ennakoivat täyden ja osatyökyvyttömyyseläkkeen saamista hylkäyksen jälkeen? von Airila, Auli, Reho, Tiia, Karvala, Kirsi, Määttä, Petri, Hårdh, Sami, Louhimo, Riku

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Let-7 microRNA controls invasion-promoting lysosomal changes via the oncogenic transcription factor myeloid zinc finger-1 von Tvingsholm, Siri Amanda, Hansen, Malene Bredahl, Clemmensen, Knut Kristoffer Bundgaard, Brix, Ditte Marie, Rafn, Bo, Frankel, Lisa B, Louhimo, Riku, Moreira, José, Hautaniemi, Sampsa, Gromova, Irina, Jäättelä, Marja, Kallunki, Tuula

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Abstract 1999: Regulation of the oncogenic, invasion-promoting transcription factor myeloid zinc finger-1 (MZF1) in breast cancer by microRNAs von Kallunki, Tuula, Tvingsholm, Siri A., Bundgaard Clemmensen, Knut K., Brix, Ditte M., Rafn, Bo, Moreira, José, Frankel, Lisa, Lund, Anders, Louhimo, Riku, Hautaniemi, Sampsa, Gromova, Irina, Jäättelä, Marja

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Abstract 4933: Functional properties of PPFIA1, located at the 11q13 amplification region, in epithelial cancer cells von Pehkonen, Henna, Lepikhova, Tatiana, Louhimo, Riku, Peitsaro, Nina, Imai, Misa, Martinez, Rafael, Kleftsröm, Juha, Hautaniemi, Sampsa, Monni, Outi

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