PHASE: An Open-Source Program for the Analysis of Drosophila Phase, Activity, and Sleep Under Entrainment von Persons, J. L., Abhilash, L., Lopatkin, A. J., Roelofs, A., Bell, E. V., Fernandez, Maria P., Shafer, Orie T.

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PHASE: An Open-Source Program for the Analysis of Drosophila Ph ase, A ctivity, and S leep Under E ntrainment von Persons, J L, Abhilash, L, Lopatkin, A J, Roelofs, A, Bell, E V, Fernandez, Maria P, Shafer, Orie T

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PHASE: An Open-Source Program for the Analysis of DrosophilaPhase, Activity, and Sleep Under Entrainment von Persons, J L, Abhilash, L, Lopatkin, A J, Roelofs, A, Bell, E V, Fernandez, Maria P, Shafer, Orie T

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Persistence and reversal of plasmid-mediated antibiotic resistance von Lopatkin, Allison J., Meredith, Hannah R., Srimani, Jaydeep K., Pfeiffer, Connor, Durrett, Rick, You, Lingchong

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Bacterial Metabolism and Antibiotic Efficacy von Stokes, Jonathan M., Lopatkin, Allison J., Lobritz, Michael A., Collins, James J.

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Predictive biology: modelling, understanding and harnessing microbial complexity von Lopatkin, Allison J., Collins, James J.

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A White-Box Machine Learning Approach for Revealing Antibiotic Mechanisms of Action von Yang, Jason H., Wright, Sarah N., Hamblin, Meagan, McCloskey, Douglas, Alcantar, Miguel A., Schrübbers, Lars, Lopatkin, Allison J., Satish, Sangeeta, Nili, Amir, Palsson, Bernhard O., Walker, Graham C., Collins, James J.

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Clinically relevant mutations in core metabolic genes confer antibiotic resistance von Lopatkin, Allison J., Bening, Sarah C., Manson, Abigail L., Stokes, Jonathan M., Kohanski, Michael A., Badran, Ahmed H., Earl, Ashlee M., Cheney, Nicole J., Yang, Jason H., Collins, James J.

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Conjugation dynamics depend on both the plasmid acquisition cost and the fitness cost von Prensky, Hannah, Gomez‐Simmonds, Angela, Uhlemann, Anne‐Catrin, Lopatkin, Allison J

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Selection and horizontal gene transfer underlie microdiversity-level heterogeneity in resistance gene fate during wastewater treatment von Brown, Connor L., Maile-Moskowitz, Ayella, Lopatkin, Allison J., Xia, Kang, Logan, Latania K., Davis, Benjamin C., Zhang, Liqing, Vikesland, Peter J., Pruden, Amy

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Dissecting the effects of antibiotics on horizontal gene transfer: Analysis suggests a critical role of selection dynamics von Lopatkin, Allison J., Sysoeva, Tatyana A., You, Lingchong

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Author Correction: Selection and horizontal gene transfer underlie microdiversity-level heterogeneity in resistance gene fate during wastewater treatment von Brown, Connor L., Maile-Moskowitz, Ayella, Lopatkin, Allison J., Xia, Kang, Logan, Latania K., Davis, Benjamin C., Zhang, Liqing, Vikesland, Peter J., Pruden, Amy

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Quantitative Microbial Risk Assessment of Antimicrobial Resistant and Susceptible Staphylococcus aureus in Reclaimed Wastewaters von Schoen, Mary E, Jahne, Michael A, Garland, Jay, Ramirez, Lucia, Lopatkin, Allison J, Hamilton, Kerry A

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Quantitative analysis of horizontal gene transfer in complex systems von Moralez, Jenifer, Szenkiel, Karolina, Hamilton, Kerry, Pruden, Amy, Lopatkin, Allison J

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Bacterial temporal dynamics enable optimal design of antibiotic treatment von Meredith, Hannah R, Lopatkin, Allison J, Anderson, Deverick J, You, Lingchong

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Why Do Antibiotics Exist? von Spagnolo, Fabrizio, Trujillo, Monica, Dennehy, John J.

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Collective antibiotic tolerance: mechanisms, dynamics and intervention von Meredith, Hannah R, Srimani, Jaydeep K, Lee, Anna J, Lopatkin, Allison J, You, Lingchong

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Tradeoff between lag time and growth rate drives the plasmid acquisition cost von Ahmad, Mehrose, Prensky, Hannah, Balestrieri, Jacqueline, ElNaggar, Shahd, Gomez-Simmonds, Angela, Uhlemann, Anne-Catrin, Traxler, Beth, Singh, Abhyudai, Lopatkin, Allison J.

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A multiplexable assay for screening antibiotic lethality against drug-tolerant bacteria von Stokes, Jonathan M., Gutierrez, Arnaud, Lopatkin, Allison J., Andrews, Ian W., French, Shawn, Matic, Ivan, Brown, Eric D., Collins, James J.

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Drug detoxification dynamics explain the postantibiotic effect von Srimani, Jaydeep K, Huang, Shuqiang, Lopatkin, Allison J, You, Lingchong

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