OPM database and PPM web server: resources for positioning of proteins in membranes von Lomize, Mikhail A., Pogozheva, Irina D., Joo, Hyeon, Mosberg, Henry I., Lomize, Andrei L.

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Spatial arrangement of proteins in planar and curved membranes by PPM 3.0 von Lomize, Andrei L., Todd, Spencer C., Pogozheva, Irina D.

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Physics-Based Method for Modeling Passive Membrane Permeability and Translocation Pathways of Bioactive Molecules von Lomize, Andrei L, Pogozheva, Irina D

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OPM: Orientations of Proteins in Membranes database von Lomize, Mikhail A., Lomize, Andrei L., Pogozheva, Irina D., Mosberg, Henry I.

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PerMM: A Web Tool and Database for Analysis of Passive Membrane Permeability and Translocation Pathways of Bioactive Molecules von Lomize, Andrei L, Hage, Jacob M, Schnitzer, Kevin, Golobokov, Konstantin, LaFaive, Mitchell B, Forsyth, Alexander C, Pogozheva, Irina D

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Anisotropic Solvent Model of the Lipid Bilayer. 2. Energetics of Insertion of Small Molecules, Peptides, and Proteins in Membranes von Lomize, Andrei L, Pogozheva, Irina D, Mosberg, Henry I

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Positioning of proteins in membranes: A computational approach von Lomize, Andrei L., Pogozheva, Irina D., Lomize, Mikhail A., Mosberg, Henry I.

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Antimicrobial action of the cyclic peptide bactenecin on Burkholderia pseudomallei correlates with efficient membrane permeabilization von Madhongsa, Kanjana, Pasan, Supaluk, Phophetleb, Onanong, Nasompag, Sawinee, Thammasirirak, Sompong, Daduang, Sakda, Taweechaisupapong, Suwimol, Lomize, Andrei L, Patramanon, Rina

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The role of hydrophobic interactions in positioning of peripheral proteins in membranes von Lomize, Andrei L, Pogozheva, Irina D, Lomize, Mikhail A, Mosberg, Henry I

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Membranome: a database for proteome-wide analysis of single-pass membrane proteins von Lomize, Andrei L, Lomize, Mikhail A, Krolicki, Shean R, Pogozheva, Irina D

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TMDOCK: An Energy-Based Method for Modeling α-Helical Dimers in Membranes von Lomize, Andrei L., Pogozheva, Irina D.

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Membranome 2.0: database for proteome-wide profiling of bitopic proteins and their dimers von Lomize, Andrei L, Hage, Jacob M, Pogozheva, Irina D

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Evolution and adaptation of single-pass transmembrane proteins von Pogozheva, Irina D., Lomize, Andrei L.

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Structural Modeling of Cytokine-Receptor-JAK2 Signaling Complexes Using AlphaFold Multimer von Pogozheva, Irina D., Cherepanov, Stanislav, Park, Sang-Jun, Raghavan, Malini, Im, Wonpil, Lomize, Andrei L.

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Membranome 3.0: Database of single‐pass membrane proteins with AlphaFold models von Lomize, Andrei L., Schnitzer, Kevin A., Todd, Spencer C., Cherepanov, Stanislav, Outeiral, Carlos, Deane, Charlotte M., Pogozheva, Irina D.

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OPRLM: Orientations of proteins in realistic lipid membranes von Park, Sang-Jun, Todd, Spencer C., Pogozheva, Irina D., Lomize, Andrei L., Im, Wonpil

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TMPfold: A Web Tool for Predicting Stability of Transmembrane α-Helix Association von Lomize, Andrei L., Schnitzer, Kevin A., Pogozheva, Irina D.

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Comparative Molecular Dynamics Simulation Studies of Realistic Eukaryotic, Prokaryotic, and Archaeal Membranes von Pogozheva, Irina D, Armstrong, Grant A, Kong, Lingyang, Hartnagel, Timothy J, Carpino, Carly A, Gee, Stephen E, Picarello, Danielle M, Rubin, Amanda S, Lee, Jumin, Park, Soohyung, Lomize, Andrei L, Im, Wonpil

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Thermodynamics-Based Molecular Modeling of α‑Helices in Membranes and Micelles von Lomize, Andrei L, Schnitzer, Kevin A, Todd, Spencer C, Pogozheva, Irina D

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Structural adaptations of proteins to different biological membranes von Pogozheva, Irina D., Tristram-Nagle, Stephanie, Mosberg, Henry I., Lomize, Andrei L.

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