Methicillin resistance alters the biofilm phenotype and attenuates virulence in Staphylococcus aureus device-associated infections von Pozzi, Clarissa, Waters, Elaine M, Rudkin, Justine K, Schaeffer, Carolyn R, Lohan, Amanda J, Tong, Pin, Loftus, Brendan J, Pier, Gerald B, Fey, Paul D, Massey, Ruth C, O'Gara, James P

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Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle von Park, Stephen D E, Magee, David A, McGettigan, Paul A, Teasdale, Matthew D, Edwards, Ceiridwen J, Lohan, Amanda J, Murphy, Alison, Braud, Martin, Donoghue, Mark T, Liu, Yuan, Chamberlain, Andrew T, Rue-Albrecht, Kévin, Schroeder, Steven, Spillane, Charles, Tai, Shuaishuai, Bradley, Daniel G, Sonstegard, Tad S, Loftus, Brendan J, MacHugh, David E

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Polycomb PHF19 binds H3K36me3 and recruits PRC2 and demethylase NO66 to embryonic stem cell genes during differentiation von Brien, Gerard L, Gambero, Guillermo, O'Connell, David J, Jerman, Emilia, Turner, Siobhán A, Egan, Chris M, Dunne, Eiseart J, Jurgens, Maike C, Wynne, Kieran, Piao, Lianhua, Lohan, Amanda J, Ferguson, Neil, Shi, Xiaobing, Sinha, Krishna M, Loftus, Brendan J, Cagney, Gerard, Bracken, Adrian P

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BINDER: computationally inferring a gene regulatory network for Mycobacterium abscessus von Staunton, Patrick M, Miranda-CasoLuengo, Aleksandra A, Loftus, Brendan J, Gormley, Isobel Claire

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Sequencing illustrates the transcriptional response of Legionella pneumophila during infection and identifies seventy novel small non-coding RNAs von Weissenmayer, Barbara A, Prendergast, James G D, Lohan, Amanda J, Loftus, Brendan J

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Characterization of the equine skeletal muscle transcriptome identifies novel functional responses to exercise training von McGivney, Beatrice A, McGettigan, Paul A, Browne, John A, Evans, Alexander C O, Fonseca, Rita G, Loftus, Brendan J, Lohan, Amanda, MacHugh, David E, Murphy, Barbara A, Katz, Lisa M, Hill, Emmeline W

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A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius) von Edwards, Ceiridwen J, Magee, David A, Park, Stephen D E, McGettigan, Paul A, Lohan, Amanda J, Murphy, Alison, Finlay, Emma K, Shapiro, Beth, Chamberlain, Andrew T, Richards, Martin B, Bradley, Daniel G, Loftus, Brendan J, MacHugh, David E

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The Intestinal Protozoan Parasite Entamoeba histolytica Contains 20 Cysteine Protease Genes, of Which Only a Small Subset Is Expressed during In Vitro Cultivation von Bruchhaus, Iris, Loftus, Brendan J, Hall, Neil, Tannich, Egbert

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Molecular aspects of mucin biosynthesis and mucus formation in the bovine cervix during the periestrous period von Pluta, Katarzyna, McGettigan, Paul A, Reid, Colm J, Browne, John A, Irwin, Jane A, Tharmalingam, Tharmala, Corfield, Anthony, Baird, Alan, Loftus, Brendan J, Evans, Alexander C O, Carrington, Stephen D

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The diversity of Rab GTPases in Entamoeba histolytica von Saito-Nakano, Yumiko, Loftus, Brendan J., Hall, Neil, Nozaki, Tomoyoshi

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Relaxed selection drives a noisy noncoding transcriptome in members of the Mycobacterium tuberculosis complex von Dinan, Adam M, Tong, Pin, Lohan, Amanda J, Conlon, Kevin M, Miranda-CasoLuengo, Aleksandra A, Malone, Kerri M, Gordon, Stephen V, Loftus, Brendan J

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Functional characterization of the Mycobacterium abscessus genome coupled with condition specific transcriptomics reveals conserved molecular strategies for host adaptation and per... von Miranda-CasoLuengo, Aleksandra A, Staunton, Patrick M, Dinan, Adam M, Lohan, Amanda J, Loftus, Brendan J

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Evidence for Lateral Transfer of Genes Encoding Ferredoxins, Nitroreductases, NADH Oxidase, and Alcohol Dehydrogenase 3 from Anaerobic Prokaryotes to Giardia lamblia and Entamoeba... von Nixon, Julie E J, Wang, Amy, Field, Jessica, Morrison, Hilary G, McArthur, Andrew G, Sogin, Mitchell L, Loftus, Brendan J, Samuelson, John

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Entamoeba histolytica: Observations on metabolism based on the genome sequence von Anderson, Iain J., Loftus, Brendan J.

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Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling von Clarke, Michael, Lohan, Amanda J, Liu, Bernard, Lagkouvardos, Ilias, Roy, Scott, Zafar, Nikhat, Bertelli, Claire, Schilde, Christina, Kianianmomeni, Arash, Bürglin, Thomas R, Frech, Christian, Turcotte, Bernard, Kopec, Klaus O, Synnott, John M, Choo, Caleb, Paponov, Ivan, Finkler, Aliza, Heng Tan, Chris Soon, Hutchins, Andrew P, Weinmeier, Thomas, Rattei, Thomas, Chu, Jeffery S C, Gimenez, Gregory, Irimia, Manuel, Rigden, Daniel J, Fitzpatrick, David A, Lorenzo-Morales, Jacob, Bateman, Alex, Chiu, Cheng-Hsun, Tang, Petrus, Hegemann, Peter, Fromm, Hillel, Raoult, Didier, Greub, Gilbert, Miranda-Saavedra, Diego, Chen, Nansheng, Nash, Piers, Ginger, Michael L, Horn, Matthias, Schaap, Pauline, Caler, Lis, Loftus, Brendan J

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The Aedes aegypti glutathione transferase family von Lumjuan, Nongkran, Stevenson, Bradley J., Prapanthadara, La-aied, Somboon, Pradya, Brophy, Peter M., Loftus, Brendan J., Severson, David W., Ranson, Hilary

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Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro von Nalpas, Nicolas C, Park, Stephen D E, Magee, David A, Taraktsoglou, Maria, Browne, John A, Conlon, Kevin M, Rue-Albrecht, Kévin, Killick, Kate E, Hokamp, Karsten, Lohan, Amanda J, Loftus, Brendan J, Gormley, Eamonn, Gordon, Stephen V, MacHugh, David E

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TIGRFAMs: a protein family resource for the functional identification of proteins von Haft, D H, Loftus, B J, Richardson, D L, Yang, F, Eisen, J A, Paulsen, I T, White, O

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High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants von Aulicino, Anna, Dinan, Adam M, Miranda-CasoLuengo, Aleksandra A, Browne, John A, Rue-Albrecht, Kévin, MacHugh, David E, Loftus, Brendan J

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A Spliceosomal Intron in Giardia lamblia von Julie E. J. Nixon, Wang, Amy, Morrison, Hilary G., McArthur, Andrew G., Sogin, Mitchell L., Loftus, Brendan J., Samuelson, John

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