pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens von Hundal, Jasreet, Kiwala, Susanna, McMichael, Joshua, Miller, Christopher A., Xia, Huiming, Wollam, Alexander T., Liu, Connor, Zhao, Sidi, Feng, Yang-Yang, Graubert, Aaron P., Wollam, Amber Z., Neichin, Jonas, Neveau, Megan, Walker, Jason, Gillanders, William, Mardis, Elaine R., Griffith, Obi L., Griffith, Malachi

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Accounting for proximal variants improves neoantigen prediction von Hundal, Jasreet, Kiwala, Susanna, Feng, Yang-Yang, Liu, Connor J., Govindan, Ramaswamy, Chapman, William C., Uppaluri, Ravindra, Swamidass, S. Joshua, Griffith, Obi L., Mardis, Elaine R., Griffith, Malachi

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Detection of neoantigen-specific T cells following a personalized vaccine in a patient with glioblastoma von Johanns, Tanner M, Miller, Christopher A, Liu, Connor J, Perrin, Richard J, Bender, Diane, Kobayashi, Dale K, Campian, Jian L, Chicoine, Michael R, Dacey, Ralph G, Huang, Jiayi, Fritsch, Edward F, Gillanders, William E, Artyomov, Maxim N, Mardis, Elaine R, Schreiber, Robert D, Dunn, Gavin P

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TCR-engineered adoptive cell therapy effectively treats intracranial murine glioblastoma von Schaettler, Maximilian O, Desai, Rupen, Wang, Anthony Z, Livingstone, Alexandra J, Kobayashi, Dale K, Coxon, Andrew T, Bowman-Kirigin, Jay A, Liu, Connor J, Li, Mao, Bender, Diane E, White, Michael J, Kranz, David M, Johanns, Tanner M, Dunn, Gavin P

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Treatment of an aggressive orthotopic murine glioblastoma model with combination checkpoint blockade and a multivalent neoantigen vaccine von Liu, Connor J, Schaettler, Maximilian, Blaha, Dylan T, Bowman-Kirigin, Jay A, Kobayashi, Dale K, Livingstone, Alexandra J, Bender, Diane, Miller, Christopher A, Kranz, David M, Johanns, Tanner M, Dunn, Gavin P

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GATA2 Regulates Constitutive PD-L1 and PD-L2 Expression in Brain Tumors von Fu, Yujie, Liu, Connor J., Kobayashi, Dale K., Johanns, Tanner M., Bowman-Kirigin, Jay A., Schaettler, Maximilian O., Mao, Diane D., Bender, Diane, Kelley, Diane G., Uppaluri, Ravindra, Bi, Wenya Linda, Dunn, Ian F., Tao, Yu, Luo, Jingqin, Kim, Albert H., Dunn, Gavin P.

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Augmented Reality Versus Freehand Spinopelvic Fixation in Spinal Deformity: A Case-Control Study von Azad, Tej D., Alfonzo Horowitz, Melanie, Tracz, Jovanna A., Khalifeh, Jawad M., Liu, Connor J., Hughes, Liam P., Judy, Brendan F., Khan, Majid, Bydon, Ali, Witham, Timothy F.

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The Conventional Dendritic Cell 1 Subset Primes CD8+ T Cells and Traffics Tumor Antigen to Drive Antitumor Immunity in the Brain von Bowman-Kirigin, Jay A, Desai, Rupen, Saunders, Brian T, Wang, Anthony Z, Schaettler, Maximilian O, Liu, Connor J, Livingstone, Alexandra J, Kobayashi, Dale K, Durai, Vivek, Kretzer, Nicole M, Zipfel, Gregory J, Leuthardt, Eric C, Osbun, Joshua W, Chicoine, Michael R, Kim, Albert H, Murphy, Kenneth M, Johanns, Tanner M, Zinselmeyer, Bernd H, Dunn, Gavin P

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Assessing the Accuracy of Spinal Instrumentation Using Augmented Reality (AR): A Systematic Review of the Literature and Meta-Analysis von Pahwa, Bhavya, Azad, Tej D, Liu, Jiaqi, Ran, Kathleen, Liu, Connor J, Tracz, Jovanna, Sattari, Shahab Aldin, Khalifeh, Jawad M, Judy, Brendan F, Bydon, Ali, Witham, Timothy F

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CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer von Griffith, Malachi, Spies, Nicholas C, Krysiak, Kilannin, McMichael, Joshua F, Coffman, Adam C, Danos, Arpad M, Ainscough, Benjamin J, Ramirez, Cody A, Rieke, Damian T, Kujan, Lynzey, Barnell, Erica K, Wagner, Alex H, Skidmore, Zachary L, Wollam, Amber, Liu, Connor J, Jones, Martin R, Bilski, Rachel L, Lesurf, Robert, Feng, Yan-Yang, Shah, Nakul M, Bonakdar, Melika, Trani, Lee, Matlock, Matthew, Ramu, Avinash, Campbell, Katie M, Spies, Gregory C, Graubert, Aaron P, Gangavarapu, Karthik, Eldred, James M, Larson, David E, Walker, Jason R, Good, Benjamin M, Wu, Chunlei, Su, Andrew I, Dienstmann, Rodrigo, Margolin, Adam A, Tamborero, David, Lopez-Bigas, Nuria, Jones, Steven J M, Bose, Ron, Spencer, David H, Wartman, Lukas D, Wilson, Richard K, Mardis, Elaine R, Griffith, Obi L

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The conventional dendritic cell 1 subset primes CD8+ T cells and traffics tumor antigen to drive anti-tumor immunity in the brain von Bowman-Kirigin, Jay A., Desai, Rupen, Saunders, Brian T., Wang, Anthony Z., Schaettler, Maximilian O., Liu, Connor J., Livingstone, Alexandra J., Kobayashi, Dale K., Durai, Vivek, Kretzer, Nicole M., Zipfel, Gregory J., Leuthardt, Eric C., Osbun, Joshua W., Chicoine, Michael R., Kim, Albert H., Murphy, Kenneth M., Johanns, Tanner M., Zinselmeyer, Bernd H., Dunn, Gavin P.

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21. Correcting neoantigens by accounting for proximal variants von Hundal, Jasreet, Kiwala, Susanna, Feng, Yang-Yang, Liu, Connor J., McMichael, Joshua, Miller, Christopher A., Xia, Huiming, Walker, Jason, Mardis, Elaine R., Griffith, Obi L., Griffith, Malachi

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pVACtools: a computational toolkit to identify and visualize cancer neoantigens: pVACtools: toolkit for tumor neoantigen characterization von Hundal, Jasreet, Kiwala, Susanna, McMichael, Joshua, Miller, Christopher A., Xia, Huiming, Wollam, Alexander T., Liu, Connor J., Zhao, Sidi, Feng, Yang-Yang, Graubert, Aaron P., Wollam, Amber Z., Neichin, Jonas, Neveau, Megan, Walker, Jason, Gillanders, William E, Mardis, Elaine R., Griffith, Obi L., Griffith, Malachi

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Detection of neoantigen-specific T cells following a personalized vaccine in a patient with glioblastoma von Johanns, Tanner M., Miller, Christopher A., Liu, Connor J., Perrin, Richard J., Bender, Diane, Kobayashi, Dale K., Campian, Jian L., Chicoine, Michael R., Dacey, Ralph G., Huang, Jiayi, Fritsch, Edward F., Gillanders, William E., Artyomov, Maxim N., Mardis, Elaine R., Schreiber, Robert D., Dunn, Gavin P.

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COVID-19-associated acute kidney injury: consensus report of the 25th Acute Disease Quality Initiative (ADQI) Workgroup von Nadim, Mitra K., Forni, Lui G., Mehta, Ravindra L., Connor, Michael J., Liu, Kathleen D., Ostermann, Marlies, Rimmelé, Thomas, Zarbock, Alexander, Bell, Samira, Bihorac, Azra, Cantaluppi, Vincenzo, Hoste, Eric, Husain-Syed, Faeq, Germain, Michael J., Goldstein, Stuart L., Gupta, Shruti, Joannidis, Michael, Kashani, Kianoush, Koyner, Jay L., Legrand, Matthieu, Lumlertgul, Nuttha, Mohan, Sumit, Pannu, Neesh, Peng, Zhiyong, Perez-Fernandez, Xose L., Pickkers, Peter, Prowle, John, Reis, Thiago, Srisawat, Nattachai, Tolwani, Ashita, Vijayan, Anitha, Villa, Gianluca, Yang, Li, Ronco, Claudio, Kellum, John A.

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Hybrid integrated photonics using bulk acoustic resonators von Tian, Hao, Liu, Junqiu, Dong, Bin, Skehan, J. Connor, Zervas, Michael, Kippenberg, Tobias J., Bhave, Sunil A.

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Soliton microcomb based spectral domain optical coherence tomography von Marchand, Paul J., Riemensberger, Johann, Skehan, J. Connor, Ho, Jia-Jung, Pfeiffer, Martin H. P., Liu, Junqiu, Hauger, Christoph, Lasser, Theo, Kippenberg, Tobias J.

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Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program von Klarin, Derek, Damrauer, Scott M., Cho, Kelly, Sun, Yan V., Teslovich, Tanya M., Honerlaw, Jacqueline, Gagnon, David R., DuVall, Scott L., Li, Jin, Peloso, Gina M., Chaffin, Mark, Small, Aeron M., Huang, Jie, Tang, Hua, Lynch, Julie A., Ho, Yuk-Lam, Liu, Dajiang J., Emdin, Connor A., Li, Alexander H., Huffman, Jennifer E., Lee, Jennifer S., Natarajan, Pradeep, Chowdhury, Rajiv, Saleheen, Danish, Vujkovic, Marijana, Baras, Aris, Pyarajan, Saiju, Di Angelantonio, Emanuele, Neale, Benjamin M., Naheed, Aliya, Khera, Amit V., Danesh, John, Chang, Kyong-Mi, Abecasis, Gonçalo, Willer, Cristen, Dewey, Frederick E., Carey, David J., Concato, John, Gaziano, J. Michael, O’Donnell, Christopher J., Tsao, Philip S., Kathiresan, Sekar, Rader, Daniel J., Wilson, Peter W. F., Assimes, Themistocles L.

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Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients von Hawley, Alyse K., Nobu, Masaru K., Wright, Jody J., Durno, W. Evan, Morgan-Lang, Connor, Sage, Brent, Schwientek, Patrick, Swan, Brandon K., Rinke, Christian, Torres-Beltrán, Monica, Mewis, Keith, Liu, Wen-Tso, Stepanauskas, Ramunas, Woyke, Tanja, Hallam, Steven J.

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Self-Aggregating Deep Cavitand Acts as a Fluorescence Displacement Sensor for Lysine Methylation von Liu, Yang, Perez, Lizeth, Mettry, Magi, Easley, Connor J, Hooley, Richard J, Zhong, Wenwan

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