Single-cell RNA-seq reveals cell type-specific molecular and genetic associations to lupus von Perez, Richard K, Gordon, M Grace, Subramaniam, Meena, Kim, Min Cheol, Hartoularos, George C, Targ, Sasha, Sun, Yang, Ogorodnikov, Anton, Bueno, Raymund, Lu, Andrew, Thompson, Mike, Rappoport, Nadav, Dahl, Andrew, Lanata, Cristina M, Matloubian, Mehrdad, Maliskova, Lenka, Kwek, Serena S, Li, Tony, Slyper, Michal, Waldman, Julia, Dionne, Danielle, Rozenblatt-Rosen, Orit, Fong, Lawrence, Dall'Era, Maria, Balliu, Brunilda, Regev, Aviv, Yazdany, Jinoos, Criswell, Lindsey A, Zaitlen, Noah, Ye, Chun Jimmie

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Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology von Rahmani, Elior, Schweiger, Regev, Rhead, Brooke, Criswell, Lindsey A., Barcellos, Lisa F., Eskin, Eleazar, Rosset, Saharon, Sankararaman, Sriram, Halperin, Eran

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Landscape of stimulation-responsive chromatin across diverse human immune cells von Calderon, Diego, Nguyen, Michelle L. T., Mezger, Anja, Kathiria, Arwa, Müller, Fabian, Nguyen, Vinh, Lescano, Ninnia, Wu, Beijing, Trombetta, John, Ribado, Jessica V., Knowles, David A., Gao, Ziyue, Blaeschke, Franziska, Parent, Audrey V., Burt, Trevor D., Anderson, Mark S., Criswell, Lindsey A., Greenleaf, William J., Marson, Alexander, Pritchard, Jonathan K.

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Molecular Subsetting of Interferon Pathways in Sjögren's Syndrome von Hall, John C., Baer, Alan N., Shah, Ami A., Criswell, Lindsey A., Shiboski, Caroline H., Rosen, Antony, Casciola‐Rosen, Livia

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Association of NCF2, IKZF1, IRF8, IFIH1, and TYK2 with systemic lupus erythematosus von Cunninghame Graham, Deborah S, Morris, David L, Bhangale, Tushar R, Criswell, Lindsey A, Syvänen, Ann-Christine, Rönnblom, Lars, Behrens, Timothy W, Graham, Robert R, Vyse, Timothy J

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Identification of Sjögren's syndrome patient subgroups by clustering of labial salivary gland DNA methylation profiles von Chi, Calvin, Solomon, Olivia, Shiboski, Caroline, Taylor, Kimberly E, Quach, Hong, Quach, Diana, Barcellos, Lisa F, Criswell, Lindsey A

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Genome‐Wide Association Analysis Reveals Genetic Heterogeneity of Sjögren's Syndrome According to Ancestry von Taylor, Kimberly E., Wong, Quenna, Levine, David M., McHugh, Caitlin, Laurie, Cathy, Doheny, Kimberly, Lam, Mi Y., Baer, Alan N., Challacombe, Stephen, Lanfranchi, Hector, Schiødt, Morten, Srinivasan, M., Umehara, Hisanori, Vivino, Frederick B., Zhao, Yan, Shiboski, Stephen C., Daniels, Troy E., Greenspan, John S., Shiboski, Caroline H., Criswell, Lindsey A.

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A comprehensive analysis of shared loci between systemic lupus erythematosus (SLE) and sixteen autoimmune diseases reveals limited genetic overlap von Ramos, Paula S, Criswell, Lindsey A, Moser, Kathy L, Comeau, Mary E, Williams, Adrienne H, Pajewski, Nicholas M, Chung, Sharon A, Graham, Robert R, Zidovetzki, Raphael, Kelly, Jennifer A, Kaufman, Kenneth M, Jacob, Chaim O, Vyse, Timothy J, Tsao, Betty P, Kimberly, Robert P, Gaffney, Patrick M, Alarcón-Riquelme, Marta E, Harley, John B, Langefeld, Carl D

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Hypomethylation mediates genetic association with the major histocompatibility complex genes in Sjögren's syndrome von Chi, Calvin, Taylor, Kimberly E, Quach, Hong, Quach, Diana, Criswell, Lindsey A, Barcellos, Lisa F

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Primary Sjögren’s Syndrome von Mariette, Xavier, Criswell, Lindsey A

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Genetic contributions to lupus nephritis in a multi-ethnic cohort of systemic lupus erythematous patients von Lanata, Cristina M, Nititham, Joanne, Taylor, Kimberly E, Chung, Sharon A, Torgerson, Dara G, Seldin, Michael F, Pons-Estel, Bernardo A, Tusié-Luna, Teresa, Tsao, Betty P, Morand, Eric F, Alarcón-Riquelme, Marta E, Criswell, Lindsey A

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A phenotypic and genomics approach in a multi-ethnic cohort to subtype systemic lupus erythematosus von Lanata, Cristina M., Paranjpe, Ishan, Nititham, Joanne, Taylor, Kimberly E., Gianfrancesco, Milena, Paranjpe, Manish, Andrews, Shan, Chung, Sharon A., Rhead, Brooke, Barcellos, Lisa F., Trupin, Laura, Katz, Patricia, Dall’Era, Maria, Yazdany, Jinoos, Sirota, Marina, Criswell, Lindsey A.

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Associations between salivary gland histopathologic diagnoses and phenotypic features of Sjögren's syndrome among 1,726 registry participants von Daniels, Troy E., Cox, Darren, Shiboski, Caroline H., Schiødt, Morten, Wu, Ava, Lanfranchi, Hector, Umehara, Hisanori, Zhao, Yan, Challacombe, Stephen, Lam, Mi Y., De Souza, Yvonne, Schiødt, Julie, Holm, Helena, Bisio, Patricia A. M., Gandolfo, Mariana S., Sawaki, Toshioki, Li, Mengtao, Zhang, Wen, Varghese‐Jacob, Beni, Ibsen, Per, Keszler, Alicia, Kurose, Nozomu, Nojima, Takayuki, Odell, Edward, Criswell, Lindsey A., Jordan, Richard, Greenspan, John S.

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Cross-Tissue Transcriptomic Analysis Leveraging Machine Learning Approaches Identifies New Biomarkers for Rheumatoid Arthritis von Rychkov, Dmitry, Neely, Jessica, Oskotsky, Tomiko, Yu, Steven, Perlmutter, Noah, Nititham, Joanne, Carvidi, Alexander, Krueger, Melissa, Gross, Andrew, Criswell, Lindsey A, Ashouri, Judith F, Sirota, Marina

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Genome-Wide Assessment of Differential DNA Methylation Associated with Autoantibody Production in Systemic Lupus Erythematosus von Chung, Sharon A, Nititham, Joanne, Elboudwarej, Emon, Quach, Hong L, Taylor, Kimberly E, Barcellos, Lisa F, Criswell, Lindsey A

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DNA methylation 101: what is important to know about DNA methylation and its role in SLE risk and disease heterogeneity von Lanata, Cristina M, Chung, Sharon A, Criswell, Lindsey A

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Correction: Hypomethylation mediates genetic association with the major histocompatibility complex genes in Sjögren’s syndrome von Chi, Calvin, Taylor, Kimberly E, Quach, Hong, Quach, Diana, Criswell, Lindsey A, Barcellos, Lisa F

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GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteins von Zhu, Wandi S, Litterman, Adam J, Sekhon, Harshaan S, Kageyama, Robin, Arce, Maya M, Taylor, Kimberly E, Zhao, Wenxue, Criswell, Lindsey A, Zaitlen, Noah, Erle, David J, Ansel, K Mark

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Germline and somatic genetic variations of TNFAIP3 in lymphoma complicating primary Sjögren's syndrome von Nocturne, Gaetane, Boudaoud, Saida, Miceli-Richard, Corinne, Viengchareun, Say, Lazure, Thierry, Nititham, Joanne, Taylor, Kimberly E., Ma, Averil, Busato, Florence, Melki, Judith, Lessard, Christopher J., Sivils, Kathy L., Dubost, Jean-Jacques, Hachulla, Eric, Gottenberg, Jacques Eric, Lombès, Marc, Tost, Jorg, Criswell, Lindsey A., Mariette, Xavier

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Depression, medication adherence, and service utilization in systemic lupus erythematosus von Julian, Laura J., Yelin, Edward, Yazdany, Jinoos, Panopalis, Pantelis, Trupin, Laura, Criswell, Lindsey A., Katz, Patricia

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