Cisplatin DNA damage and repair maps of the human genome at single-nucleotide resolution von Hu, Jinchuan, Lieb, Jason D., Sancar, Aziz, Adar, Sheera

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Genome-wide kinetics of DNA excision repair in relation to chromatin state and mutagenesis von Adar, Sheera, Hu, Jinchuan, Lieb, Jason D., Sancar, Aziz

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A Common Set of DNA Regulatory Elements Shapes Drosophila Appendages von McKay, Daniel J., Lieb, Jason D.

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Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution von Hu, Jinchuan, Adar, Sheera, Selby, Christopher P, Lieb, Jason D, Sancar, Aziz

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Integral Nuclear Pore Proteins Bind to Pol III-Transcribed Genes and Are Required for Pol III Transcript Processing in C. elegans von Ikegami, Kohta, Lieb, Jason D.

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A Transcriptional Lineage of the Early C. elegans Embryo von Tintori, Sophia C., Osborne Nishimura, Erin, Golden, Patrick, Lieb, Jason D., Goldstein, Bob

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Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy von Lynch, Vincent J., Nnamani, Mauris C., Kapusta, Aurélie, Brayer, Kathryn, Plaza, Silvia L., Mazur, Erik C., Emera, Deena, Sheikh, Shehzad Z., Grützner, Frank, Bauersachs, Stefan, Graf, Alexander, Young, Steven L., Lieb, Jason D., DeMayo, Francesco J., Feschotte, Cédric, Wagner, Günter P.

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FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin von Giresi, Paul G, Kim, Jonghwan, McDaniell, Ryan M, Iyer, Vishwanath R, Lieb, Jason D

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What are super-enhancers? von Pott, Sebastian, Lieb, Jason D

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Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo von Schulz, Katharine N, Bondra, Eliana R, Moshe, Arbel, Villalta, Jacqueline E, Lieb, Jason D, Kaplan, Tommy, McKay, Daniel J, Harrison, Melissa M

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Interrogating the Function of Metazoan Histones using Engineered Gene Clusters von McKay, Daniel J., Klusza, Stephen, Penke, Taylor J.R., Meers, Michael P., Curry, Kaitlin P., McDaniel, Stephen L., Malek, Pamela Y., Cooper, Stephen W., Tatomer, Deirdre C., Lieb, Jason D., Strahl, Brian D., Duronio, Robert J., Matera, A. Gregory

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Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements) von Giresi, Paul G., Lieb, Jason D.

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Highly Transcribed RNA Polymerase II Genes Are Impediments to Replication Fork Progression in Saccharomyces cerevisiae von Azvolinsky, Anna, Giresi, Paul G., Lieb, Jason D., Zakian, Virginia A.

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High nucleosome occupancy is encoded at human regulatory sequences von Tillo, Desiree, Kaplan, Noam, Moore, Irene K, Fondufe-Mittendorf, Yvonne, Gossett, Andrea J, Field, Yair, Lieb, Jason D, Widom, Jonathan, Segal, Eran, Hughes, Timothy R

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A map of open chromatin in human pancreatic islets von Mohlke, Karen L, Lieb, Jason D, Ferrer, Jorge, Gaulton, Kyle J, Nammo, Takao, Pasquali, Lorenzo, Simon, Jeremy M, Giresi, Paul G, Fogarty, Marie P, Panhuis, Tami M, Mieczkowski, Piotr, Secchi, Antonio, Bosco, Domenico, Berney, Thierry, Montanya, Eduard

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The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny von Rechtsteiner, Andreas, Ercan, Sevinc, Takasaki, Teruaki, Phippen, Taryn M, Egelhofer, Thea A, Wang, Wenchao, Kimura, Hiroshi, Lieb, Jason D, Strome, Susan

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In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae von Gossett, Andrea J, Lieb, Jason D

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Histone modifications predispose genome regions to breakage and translocation von Burman, Bharat, Zhang, Zhuzhu Z, Pegoraro, Gianluca, Lieb, Jason D, Misteli, Tom

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An inverse relationship to germline transcription defines centromeric chromatin in C. elegans von Gassmann, Reto, Rechtsteiner, Andreas, Yuen, Karen W., Muroyama, Andrew, Egelhofer, Thea, Gaydos, Laura, Barron, Francie, Maddox, Paul, Essex, Anthony, Monen, Joost, Ercan, Sevinc, Lieb, Jason D., Oegema, Karen, Strome, Susan, Desai, Arshad

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ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments von Buck, Michael J, Lieb, Jason D

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