Insights from 20 years of bacterial genome sequencing von Land, Miriam, Hauser, Loren, Jun, Se-Ran, Nookaew, Intawat, Leuze, Michael R., Ahn, Tae-Hyuk, Karpinets, Tatiana, Lund, Ole, Kora, Guruprased, Wassenaar, Trudy, Poudel, Suresh, Ussery, David W.

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CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database von Park, Byung H, Karpinets, Tatiana V, Syed, Mustafa H, Leuze, Michael R, Uberbacher, Edward C

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Profiling a Community-Specific Function Landscape for Bacterial Peptides Through Protein-Level Meta-Assembly and Machine Learning von Vajjala, Mitra, Johnson, Brady, Kasparek, Lauren, Leuze, Michael, Yao, Qiuming

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MicroRNAs Form Triplexes with Double Stranded DNA at Sequence-Specific Binding Sites; a Eukaryotic Mechanism via which microRNAs Could Directly Alter Gene Expression von Paugh, Steven W, Coss, David R, Bao, Ju, Laudermilk, Lucas T, Grace, Christy R, Ferreira, Antonio M, Waddell, M Brett, Ridout, Granger, Naeve, Deanna, Leuze, Michael, LoCascio, Philip F, Panetta, John C, Wilkinson, Mark R, Pui, Ching-Hon, Naeve, Clayton W, Uberbacher, Edward C, Bonten, Erik J, Evans, William E

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Ebolavirus comparative genomics von Jun, Se-Ran, Leuze, Michael R., Nookaew, Intawat, Uberbacher, Edward C., Land, Miriam, Zhang, Qian, Wanchai, Visanu, Chai, Juanjuan, Nielsen, Morten, Trolle, Thomas, Lund, Ole, Buzard, Gregory S., Pedersen, Thomas D., Wassenaar, Trudy M., Ussery, David W.

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The Human Fatty Acid Synthase Gene and De Novo Lipogenesis Are Coordinately Regulated in Human Adipose Tissue von Wang, Yanxin, Urs, Sumithra, Kim, Suyeon, Soltani-Bejnood, Morvarid, Quigley, Neil, Heo, Young-Ran, Standridge, Melissa, Andersen, Brett, Joshi, Rashika, Wortman, Patrick, Moustaid-Moussa, Naima, Jones Voy, Brynn, Dhar, Madhu, Taylor, James W., Chun, Joseph, Leuze, Michael, Claycombe, Kate, Saxton, Arnold M.

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BESC knowledgebase public portal von SYED, Mustafa H, KARPINETS, Tatiana V, PARANG, Morey, LEUZE, Michael R, PARK, Byung H, HYATT, Doug, BROWN, Steven D, MOULTON, Steve, GALLOWAY, Michael D, UBERBACHER, Edward C

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Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions von Karpinets, Tatiana V, Romine, Margaret F, Schmoyer, Denise D, Kora, Guruprasad H, Syed, Mustafa H, Leuze, Michael R, Serres, Margrethe H, Park, Byung H, Samatova, Nagiza F, Uberbacher, Edward C

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Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer von Zhang, Qian, Jun, Se-Ran, Leuze, Michael, Ussery, David, Nookaew, Intawat

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Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA von Leuze, Michael R., Karpinets, Tatiana V., Syed, Mustafa H., Beliaev, Alexander S., Uberbacher, Edward C.

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Evaluation of sliding baseline methods for spatial estimation for cluster detection in the biosurveillance system von Xing, Jian, Burkom, Howard, Moniz, Linda, Edgerton, James, Leuze, Michael, Tokars, Jerome

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Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1 von Syed, Mustafa H, Karpinets, Tatiana V, Leuze, Michael R, Kora, Guruprasad H, Romine, Margaret R, Uberbacher, Edward C

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MicroRNAs Form Triplexes with Double Stranded DNA at Sequence-Specific Binding Sites; a Eukaryotic Mechanism via which microRNAs Could Directly Alter Gene Expression: e1004744 von Paugh, Steven W, Coss, David R, Bao, Ju, Laudermilk, Lucas T, Grace, Christy R, Ferreira, Antonio M, Waddell, M Brett, Ridout, Granger, Naeve, Deanna, Leuze, Michael, LoCascio, Philip F, Panetta, John C, Wilkinson, Mark R, Pui, Ching-Hon, Naeve, Clayton W, Uberbacher, Edward C, Bonten, Erik J, Evans, William E

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BESC public portal: an integrative analysis of a resequenced ethanol adapted Clostridium thermocellum mutant von Syed, Mustafa H, Karpinets, Tatiana V, Leuze, Michael Rex, Park, Byung, Hyatt, Philip Douglas, Brown, Steven D, Uberbacher, Edward C

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Binding motifs in bacterial gene promoters modulate transcriptional effect of global regulators von Leuze, Michael Rex, Karpinets, Tatiana V, Syed, Mustafa H, Beliaev, Alexander S, Uberbacher, Edward C

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Independent set orderings for parallel matrix factorization by Gaussian elimination von Leuze, Michael R

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ShewRegDB: a Visualization Environment for Integration of Experimental and In Silico Derived Regulatory Information in Shewanella oneidensis MR-1 von Syed, Mustafa H, Karpinets, Tatiana V, Leuze, Michael Rex, Kora, Guruprasad H, Romine, Margaret, Uberbacher, Edward C

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Mining multi-dimensional data for decision support von Donato, June M., Schryver, Jack C., Hinkel, Gregory C., Schmoyer, Richard L., Leuze, Michael R., Grandy, Nancy W.

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Vector space model for the generalized parts grouping problem von Samatova, Nagiza F., Potok, Thomas E., Leuze, Michael R.

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Financial automated management environment von Barnes, Kimberly D., Leuze, Michael R.

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