QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species von Tang, Jifeng, Vosman, Ben, Voorrips, Roeland E, van der Linden, C Gerard, Leunissen, Jack A M

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Large-scale identification of polymorphic microsatellites using an in silico approach von Tang, J, Baldwin, S.J, Jacobs, J.M.E, Linden, C.G. van der, Voorrips, R.E, Leunissen, J.A.M, Eck, H.J. van, Vosman, B

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Primer3Plus, an enhanced web interface to Primer3 von Untergasser, Andreas, Nijveen, Harm, Rao, Xiangyu, Bisseling, Ton, Geurts, René, Leunissen, Jack A M

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HaploSNPer: a web-based allele and SNP detection tool von Tang, J, Leunissen, J.A.M, Voorrips, R.E, Linden, C.G. van der, Vosman, B

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Testing statistical significance scores of sequence comparison methods with structure similarity von Hulsen, Tim, de Vlieg, Jacob, Leunissen, Jack A M, Groenen, Peter M A

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The Human Leukocyte Antigen–presented Ligandome of B Lymphocytes von Hassan, Chopie, Kester, Michel G.D., de Ru, Arnoud H., Hombrink, Pleun, Drijfhout, Jan Wouter, Nijveen, Harm, Leunissen, Jack A.M., Heemskerk, Mirjam H.M., Falkenburg, J.H. Frederik, van Veelen, Peter A.

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Using R in Taverna: RShell v1.2 von Wassink, I, Rauwerda, H, Neerincx, P.B.T, Vet, P.E. van der, Breit, T.M, Leunissen, J.A.M, Nijholt, A

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Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks von Kuzniar, Arnold, Dhir, Somdutta, Nijveen, Harm, Pongor, Sándor, Leunissen, Jack A M

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ProRepeat: an integrated repository for studying amino acid tandem repeats in proteins von Luo, Hong, Lin, Ke, David, Audrey, Nijveen, Harm, Leunissen, Jack A. M.

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Gene Expression in Chicken Reveals Correlation with Structural Genomic Features and Conserved Patterns of Transcription in the Terrestrial Vertebrates von Nie, H, Crooijmans, R.P.M.A, Lammers, A, Schothorst, E.M. van, Keijer, J, Neerincx, P, Leunissen, J.A.M, Megens, H.J.W.C, Groenen, M.A.M

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SEQATOMS: a web tool for identifying missing regions in PDB in sequence context von Brandt, B.W, Heringa, J, Leunissen, J.A.M

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Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks von Kuzniar, Arnold, Dhir, Somdutta, Nijveen, Harm, Pongor, Sándor, Leunissen, Jack A.M.

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A Protein Classification Benchmark collection for machine learning von Sonego, P, Pacurar, M, Dhir, S, Kertész-Farkas, A, Kocsor, A, Gáspári, Z, Leunissen, J.A.M, Pongor, S

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Role of the Synthase Domain of Ags1p in Cell Wall α-Glucan Biosynthesis in Fission Yeast von Vos, Alina, Dekker, Nick, Distel, Ben, Leunissen, Jack A.M., Hochstenbach, Frans

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ProGMap: an integrated annotation resource for protein orthology von Kuzniar, A, Lin, K, He, Y, Nijveen, H, Pongor, S, Leunissen, J.A.M

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HSPVdb--the Human Short Peptide Variation Database for improved mass spectrometry-based detection of polymorphic HLA-ligands von Nijveen, Harm, Kester, Michel G. D, Hassan, Chopie, Viars, Aurélie, de Ru, Arnoud H, de Jager, Machiel, Falkenburg, J. H. Fred, Leunissen, Jack A. M, van Veelen, Peter A

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Constraint-based probabilistic learning of metabolic pathways from tomato volatiles von Gavai, Anand K, Tikunov, Yury, Ursem, Remco, Bovy, Arnaud, van Eeuwijk, Fred, Nijveen, Harm, Lucas, Peter J. F, Leunissen, Jack A. M

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TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure von Alako, B.T.F, Rainey, D, Nijveen, H, Leunissen, J.A.M

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Ten Simple Rules for Developing a Short Bioinformatics Training Course: e1002245 von Via, Allegra, Rivas, Javier DeLas, Attwood, Teresa K, Landsman, David, Brazas, Michelle D, Leunissen, Jack AM, Tramontano, Anna, Schneider, Maria Victoria

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A Comparison of Database Systems for XML-Type Data von Risse, Judith E., Leunissen, Jack A.M.

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