Transcriptome-wide miR-155 Binding Map Reveals Widespread Noncanonical MicroRNA Targeting von Loeb, Gabriel B., Khan, Aly A., Canner, David, Hiatt, Joseph B., Shendure, Jay, Darnell, Robert B., Leslie, Christina S., Rudensky, Alexander Y.

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ILC1 Confer Early Host Protection at Initial Sites of Viral Infection von Weizman, Orr-El, Adams, Nicholas M., Schuster, Iona S., Krishna, Chirag, Pritykin, Yuri, Lau, Colleen, Degli-Esposti, Mariapia A., Leslie, Christina S., Sun, Joseph C., O’Sullivan, Timothy E.

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A Single miRNA-mRNA Interaction Affects the Immune Response in a Context- and Cell-Type-Specific Manner von Lu, Li-Fan, Gasteiger, Georg, Yu, I-Shing, Chaudhry, Ashutosh, Hsin, Jing-Ping, Lu, Yuheng, Bos, Paula D., Lin, Ling-Li, Zawislak, Carolyn L., Cho, Sunglim, Sun, Joseph C., Leslie, Christina S., Lin, Shu-Wha, Rudensky, Alexander Y.

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The effect of cellular context on miR-155-mediated gene regulation in four major immune cell types von Hsin, Jing-Ping, Lu, Yuheng, Loeb, Gabriel B., Leslie, Christina S., Rudensky, Alexander Y.

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Cancer Immunosurveillance by Tissue-Resident Innate Lymphoid Cells and Innate-like T Cells von Dadi, Saïda, Chhangawala, Sagar, Whitlock, Benjamin M., Franklin, Ruth A., Luo, Chong T., Oh, Soyoung A., Toure, Ahmed, Pritykin, Yuri, Huse, Morgan, Leslie, Christina S., Li, Ming O.

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GuideScan software for improved single and paired CRISPR guide RNA design von Perez, Alexendar R, Pritykin, Yuri, Vidigal, Joana A, Chhangawala, Sagar, Zamparo, Lee, Leslie, Christina S, Ventura, Andrea

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Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression von Lianoglou, Steve, Garg, Vidur, Yang, Julie L, Leslie, Christina S, Mayr, Christine

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SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps von Setty, Manu, Leslie, Christina S

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FOXA1 mutations alter pioneering activity, differentiation and prostate cancer phenotypes von Adams, Elizabeth J., Karthaus, Wouter R., Hoover, Elizabeth, Liu, Deli, Gruet, Antoine, Zhang, Zeda, Cho, Hyunwoo, DiLoreto, Rose, Chhangawala, Sagar, Liu, Yang, Watson, Philip A., Davicioni, Elai, Sboner, Andrea, Barbieri, Christopher E., Bose, Rohit, Leslie, Christina S., Sawyers, Charles L.

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Epiphany: predicting Hi-C contact maps from 1D epigenomic signals von Yang, Rui, Das, Arnav, Gao, Vianne R, Karbalayghareh, Alireza, Noble, William S, Bilmes, Jeffrey A, Leslie, Christina S

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PI3K pathway regulates ER-dependent transcription in breast cancer through the epigenetic regulator KMT2D von Toska, Eneda, Osmanbeyoglu, Hatice U., Castel, Pau, Chan, Carmen, Hendrickson, Ronald C., Elkabets, Moshe, Dickler, Maura N., Scaltriti, Maurizio, Leslie, Christina S., Armstrong, Scott A., Baselga, José

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CSF-1R inhibition alters macrophage polarization and blocks glioma progression von Pyonteck, Stephanie M, Akkari, Leila, Schuhmacher, Alberto J, Bowman, Robert L, Sevenich, Lisa, Quail, Daniela F, Olson, Oakley C, Quick, Marsha L, Huse, Jason T, Teijeiro, Virginia, Setty, Manu, Leslie, Christina S, Oei, Yoko, Pedraza, Alicia, Zhang, Jianan, Brennan, Cameron W, Sutton, James C, Holland, Eric C, Daniel, Dylan, Joyce, Johanna A

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Widespread intronic polyadenylation diversifies immune cell transcriptomes von Singh, Irtisha, Lee, Shih-Han, Sperling, Adam S., Samur, Mehmet K., Tai, Yu-Tzu, Fulciniti, Mariateresa, Munshi, Nikhil C., Mayr, Christine, Leslie, Christina S.

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Early enhancer establishment and regulatory locus complexity shape transcriptional programs in hematopoietic differentiation von González, Alvaro J, Setty, Manu, Leslie, Christina S

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ARID1A determines luminal identity and therapeutic response in estrogen-receptor-positive breast cancer von Xu, Guotai, Chhangawala, Sagar, Cocco, Emiliano, Razavi, Pedram, Cai, Yanyan, Otto, Jordan E, Ferrando, Lorenzo, Selenica, Pier, Ladewig, Erik, Chan, Carmen, Da Cruz Paula, Arnaud, Witkin, Matthew, Cheng, Yuanming, Park, Jane, Serna-Tamayo, Cristian, Zhao, HuiYong, Wu, Fan, Sallaku, Mirna, Qu, Xuan, Zhao, Alison, Collings, Clayton K, D’Avino, Andrew R., Jhaveri, Komal, Koche, Richard, Levine, Ross L., Reis-Filho, Jorge S., Kadoch, Cigall, Scaltriti, Maurizio, Leslie, Christina S., Baselga, José, Toska, Eneda

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Learning to Predict miRNA-mRNA Interactions from AGO CLIP Sequencing and CLASH Data von Lu, Yuheng, Leslie, Christina S

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Multitask learning improves prediction of cancer drug sensitivity von Yuan, Han, Paskov, Ivan, Paskov, Hristo, González, Alvaro J., Leslie, Christina S.

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BindSpace decodes transcription factor binding signals by large-scale sequence embedding von Yuan, Han, Kshirsagar, Meghana, Zamparo, Lee, Lu, Yuheng, Leslie, Christina S.

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Target mRNA abundance dilutes microRNA and siRNA activity von Arvey, Aaron, Larsson, Erik, Sander, Chris, Leslie, Christina S, Marks, Debora S

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Single-Cell Transcriptional Profiling Reveals Signatures of Helper, Effector, and Regulatory MAIT Cells during Homeostasis and Activation von Vorkas, Charles Kyriakos, Krishna, Chirag, Li, Kelin, Aubé, Jeffrey, Fitzgerald, Daniel W, Mazutis, Linas, Leslie, Christina S, Glickman, Michael S

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