GWAS for quantitative resistance phenotypes in Mycobacterium tuberculosis reveals resistance genes and regulatory regions von Farhat, Maha R., Freschi, Luca, Calderon, Roger, Ioerger, Thomas, Snyder, Matthew, Meehan, Conor J., de Jong, Bouke, Rigouts, Leen, Sloutsky, Alex, Kaur, Devinder, Sunyaev, Shamil, van Soolingen, Dick, Shendure, Jay, Sacchettini, Jim, Murray, Megan

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A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region von Ngabonziza, Jean Claude Semuto, Loiseau, Chloé, Marceau, Michael, Jouet, Agathe, Menardo, Fabrizio, Tzfadia, Oren, Antoine, Rudy, Niyigena, Esdras Belamo, Mulders, Wim, Fissette, Kristina, Diels, Maren, Gaudin, Cyril, Duthoy, Stéphanie, Ssengooba, Willy, André, Emmanuel, Kaswa, Michel K., Habimana, Yves Mucyo, Brites, Daniela, Affolabi, Dissou, Mazarati, Jean Baptiste, de Jong, Bouke Catherine, Rigouts, Leen, Gagneux, Sebastien, Meehan, Conor Joseph, Supply, Philip

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Reconstituting the genus Mycobacterium von Meehan, Conor J, Barco, Roman A, Loh, Yong-Hwee E, Cogneau, Sari, Rigouts, Leen

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Deep amplicon sequencing for culture-free prediction of susceptibility or resistance to 13 anti-tuberculous drugs von Jouet, Agathe, Gaudin, Cyril, Badalato, Nelly, Allix-Béguec, Caroline, Duthoy, Stéphanie, Ferré, Alice, Diels, Maren, Laurent, Yannick, Contreras, Sandy, Feuerriegel, Silke, Niemann, Stefan, André, Emmanuel, Kaswa, Michel K, Tagliani, Elisa, Cabibbe, Andrea, Mathys, Vanessa, Cirillo, Daniela, de Jong, Bouke C, Rigouts, Leen, Supply, Philip

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Rifampin Drug Resistance Tests for Tuberculosis: Challenging the Gold Standard von Van Deun, Armand, Aung, Kya J M, Bola, Valentin, Lebeke, Rossin, Hossain, Mohamed Anwar, de Rijk, Willem Bram, Rigouts, Leen, Gumusboga, Aysel, Torrea, Gabriela, de Jong, Bouke C

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Rifampin Resistance Missed in Automated Liquid Culture System for Mycobacterium tuberculosis Isolates with Specific rpoB Mutations von Rigouts, Leen, Gumusboga, Mourad, de Rijk, Willem Bram, Nduwamahoro, Elie, Uwizeye, Cécile, de Jong, Bouke, Van Deun, Armand

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Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development von Borrell, Sònia, Trauner, Andrej, Brites, Daniela, Rigouts, Leen, Loiseau, Chloe, Coscolla, Mireia, Niemann, Stefan, De Jong, Bouke, Yeboah-Manu, Dorothy, Kato-Maeda, Midori, Feldmann, Julia, Reinhard, Miriam, Beisel, Christian, Gagneux, Sebastien

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Broad diversity of Mycobacterium tuberculosis complex strains isolated from humans and cattle in Northern Algeria suggests a zoonotic transmission cycle von Damene, Hanane, Tahir, Djamel, Diels, Maren, Berber, Ali, Sahraoui, Naima, Rigouts, Leen

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Newly Identified Mycobacterium africanum Lineage 10, Central Africa von Guyeux, Christophe, Senelle, Gaetan, Le Meur, Adrien, Supply, Philip, Gaudin, Cyril, Phelan, Jody E, Clark, Taane G, Rigouts, Leen, de Jong, Bouke, Sola, Christophe, Refrégier, Guislaine

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Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase von Ezewudo, Matthew, Borens, Amanda, Chiner-Oms, Álvaro, Miotto, Paolo, Chindelevitch, Leonid, Starks, Angela M., Hanna, Debra, Liwski, Richard, Zignol, Matteo, Gilpin, Christopher, Niemann, Stefan, Kohl, Thomas Andreas, Warren, Robin M., Crook, Derrick, Gagneux, Sebastien, Hoffner, Sven, Rodrigues, Camilla, Comas, Iñaki, Engelthaler, David M., Alland, David, Rigouts, Leen, Lange, Christoph, Dheda, Keertan, Hasan, Rumina, McNerney, Ruth, Cirillo, Daniela M., Schito, Marco, Rodwell, Timothy C., Posey, James

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Community-based active tuberculosis case finding in poor urban settlements of Phnom Penh, Cambodia: a feasible and effective strategy von Lorent, Natalie, Choun, Kimcheng, Thai, Sopheak, Kim, Tharin, Huy, Sopheaktra, Pe, Reaksmey, van Griensven, Johan, Buyze, Jozefien, Colebunders, Robert, Rigouts, Leen, Lynen, Lutgarde

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High Level of Cross-Resistance between Kanamycin, Amikacin, and Capreomycin among Mycobacterium tuberculosis Isolates from Georgia and a Close Relation with Mutations in the rrs Ge... von JUGHELI, Levan, BZEKALAVA, Nino, DE RIJK, Pim, FISSETTE, Krista, PORTAELS, Françoise, RIGOUTS, Leen

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Challenges and knowledge gaps in the management of non-tuberculous mycobacterial pulmonary disease in sub-Saharan African countries with a high tuberculosis burden: a scoping revie... von Abbew, Elizabeth Tabitha, Lorent, Natalie, Mesic, Anita, Wachinou, Ablo Prudence, Obiri-Yeboah, Dorcas, Decroo, Tom, Rigouts, Leen, Lynen, Lutgarde

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GeneXpert MTB/RIF Assay for the Diagnosis of Tuberculous Lymphadenitis on Concentrated Fine Needle Aspirates in High Tuberculosis Burden Settings von Tadesse, Mulualem, Abebe, Gemeda, Abdissa, Ketema, Aragaw, Dossegnaw, Abdella, Kedir, Bekele, Alemayehu, Bezabih, Mesele, Apers, Ludwig, de Jong, Bouke C, Rigouts, Leen

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GeneXpert MTB/RIF Ultra performance to detect uncommon rpoB mutations in Mycobacterium tuberculosis von Rigouts, Leen, Keysers, Jelle, Rabab, Reenaers, Fissette, Kristina, van Deun, Armand, de Jong, Bouke Catherine

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Targeted next-generation sequencing of sputum for diagnosis of drug-resistant TB: results of a national survey in Democratic Republic of the Congo von Kayomo, Michel Kaswa, Mbula, Vital Nkake, Aloni, Muriel, André, Emmanuel, Rigouts, Leen, Boutachkourt, Fairouz, de Jong, Bouke C., Nkiere, Nicolas M., Dean, Anna S.

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Rifampin Heteroresistance in Mycobacterium tuberculosis Cultures as Detected by Phenotypic and Genotypic Drug Susceptibility Test Methods von Folkvardsen, Dorte Bek, Thomsen, Vibeke Ø, Rigouts, Leen, Rasmussen, Erik Michael, Bang, Didi, Bernaerts, Gertjan, Werngren, Jim, Toro, Juan Carlos, Hoffner, Sven, Hillemann, Doris, Svensson, Erik

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Initial resistance to companion drugs should not be considered an exclusion criterion for the shorter multidrug-resistant tuberculosis treatment regimen von Lempens, Pauline, Decroo, Tom, Aung, Kya J.M., Hossain, Mohammad A., Rigouts, Leen, Meehan, Conor J., Van Deun, Armand, de Jong, Bouke C.

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Genotypic characterization directly applied to sputum improves the detection of Mycobacterium africanum West African 1, under-represented in positive cultures von Sanoussi, C N'Dira, Affolabi, Dissou, Rigouts, Leen, Anagonou, Séverin, de Jong, Bouke

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Genetic diversity of the Mycobacterium tuberculosis complex strains from newly diagnosed tuberculosis patients in Northwest Ethiopia reveals a predominance of East-African-Indian a... von Ejo, Mebrat, Torrea, Gabriela, Uwizeye, Cecile, Kassa, Meseret, Girma, Yilak, Bekele, Tiruzer, Ademe, Yilkal, Diro, Ermias, Gehre, Florian, Rigouts, Leen, de Jong, Bouke C.

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