Deep learning of the tissue-regulated splicing code von Leung, Michael K K, Xiong, Hui Yuan, Lee, Leo J, Frey, Brendan J

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing von Pan, Qun, Shai, Ofer, Lee, Leo J, Frey, Brendan J, Blencowe, Benjamin J

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The Evolutionary Landscape of Alternative Splicing in Vertebrate Species von Barbosa-Morais, Nuno L., Irimia, Manuel, Pan, Qun, Xiong, Hui Y., Gueroussov, Serge, Lee, Leo J., Slobodeniuc, Valentina, Kutter, Claudia, Watt, Stephen, Çolak, Recep, Kim, TaeHyung, Misquitta-Ali, Christine M., Wilson, Michael D., Kim, Philip M., Odom, Duncan T., Frey, Brendan J., Blencowe, Benjamin J.

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Genome-wide analysis of alternative splicing in Caenorhabditis elegans von Ramani, Arun K, Calarco, John A, Pan, Qun, Mavandadi, Sepand, Wang, Ying, Nelson, Andrew C, Lee, Leo J, Morris, Quaid, Blencowe, Benjamin J, Zhen, Mei, Fraser, Andrew G

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IntroSpect: Motif-Guided Immunopeptidome Database Building Tool to Improve the Sensitivity of HLA I Binding Peptide Identification by Mass Spectrometry von Zhang, Le, Liu, Geng, Hou, Guixue, Xiang, Haitao, Zhang, Xi, Huang, Ying, Zhang, Xiuqing, Li, Bo, Lee, Leo J

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A graph neural network approach for molecule carcinogenicity prediction von Fradkin, Philip, Young, Adamo, Atanackovic, Lazar, Frey, Brendan, Lee, Leo J, Wang, Bo

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Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data von Kakaradov, Boyko, Xiong, Hui Yuan, Lee, Leo J, Jojic, Nebojsa, Frey, Brendan J

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The human splicing code reveals new insights into the genetic determinants of disease von Xiong, Hui Y., Alipanahi, Babak, Lee, Leo J., Bretschneider, Hannes, Merico, Daniele, Yuen, Ryan K. C., Hua, Yimin, Gueroussov, Serge, Najafabadi, Hamed S., Hughes, Timothy R., Morris, Quaid, Barash, Yoseph, Krainer, Adrian R., Jojic, Nebojsa, Scherer, Stephen W., Blencowe, Benjamin J., Frey, Brendan J.

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Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes von Blencowe, Benjamin J, Ahmad, Sidrah, Lee, Leo J

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The co-stimulation of anti-CD28 and IL-2 enhances the sensitivity of ELISPOT assays for detection of neoantigen-specific T cells in PBMC von Tang, Yunxia, Zhu, Linnan, Xu, Qumiao, Zhang, Xiuqing, Li, Bo, Lee, Leo J.

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Transcriptional profiling of endocrine cerebro-osteodysplasia using microarray and next-generation sequencing von Lahiry, Piya, Lee, Leo J, Frey, Brendan J, Rupar, C Anthony, Siu, Victoria M, Blencowe, Benjamin J, Hegele, Robert A

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ADAR1-Dependent RNA Editing Promotes MET and iPSC Reprogramming by Alleviating ER Stress von Guallar, Diana, Fuentes-Iglesias, Alejandro, Souto, Yara, Ameneiro, Cristina, Freire-Agulleiro, Oscar, Pardavila, Jose Angel, Escudero, Adriana, Garcia-Outeiral, Vera, Moreira, Tiago, Saenz, Carmen, Xiong, Heng, Liu, Dongbing, Xiao, Shidi, Hou, Yong, Wu, Kui, Torrecilla, Daniel, Hartner, Jochen C., Blanco, Miguel G., Lee, Leo J., López, Miguel, Walkley, Carl R., Wang, Jianlong, Fidalgo, Miguel

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AVISPA: a web tool for the prediction and analysis of alternative splicing von Barash, Yoseph, Vaquero-Garcia, Jorge, González-Vallinas, Juan, Xiong, Hui Yuan, Gao, Weijun, Lee, Leo J, Frey, Brendan J

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Mutations in STAMBP, encoding a deubiquitinating enzyme, cause microcephaly–capillary malformation syndrome von McDonell, Laura M, Mirzaa, Ghayda M, Alcantara, Diana, Schwartzentruber, Jeremy, Carter, Melissa T, Lee, Leo J, Clericuzio, Carol L, Graham, John M, Morris-Rosendahl, Deborah J, Polster, Tilman, Acsadi, Gyula, Townshend, Sharron, Williams, Simon, Halbert, Anne, Isidor, Bertrand, David, Albert, Smyser, Christopher D, Paciorkowski, Alex R, Willing, Marcia, Woulfe, John, Das, Soma, Beaulieu, Chandree L, Marcadier, Janet, Geraghty, Michael T, Frey, Brendan J, Majewski, Jacek, Bulman, Dennis E, Dobyns, William B, O'Driscoll, Mark, Boycott, Kym M

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Characterization of RNA editome in primary and metastatic lung adenocarcinomas von Peng, Lihua, Lee, Leo J, Xiong, Heng, Su, Hong, Rao, Junhua, Xiao, Dakai, He, Jianxing, Wu, Kui, Liu, Dongbing

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RED-ML: a novel, effective RNA editing detection method based on machine learning von Xiong, Heng, Liu, Dongbing, Li, Qiye, Lei, Mengyue, Xu, Liqin, Wu, Liang, Wang, Zongji, Ren, Shancheng, Li, Wangsheng, Xia, Min, Lu, Lihua, Lu, Haorong, Hou, Yong, Zhu, Shida, Liu, Xin, Sun, Yinghao, Wang, Jian, Yang, Huanming, Wu, Kui, Xu, Xun, Lee, Leo J.

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Adaptive Kalman Filtering and Smoothing for Tracking Vocal Tract Resonances Using a Continuous-Valued Hidden Dynamic Model von Li Deng, Lee, L.J., Attias, H., Acero, A.

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Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction von Wells, Daniel K., Dang, Kristen K., Sheehan, Kathleen C.F., Campbell, Katie M., Lamb, Andrew, Ward, Jeffrey P., Sidney, John, Blazquez, Ana B., Rech, Andrew J., Zaretsky, Jesse M., Ng, Alphonsus H.C., Yu, Thomas V., Manning, Patrice, Steiner, Gabriela M., Khan, Aly A., Lugade, Amit, Frentzen, Angela A. Elizabeth, Tadmor, Arbel D., Sasson, Ariella S., Rao, Arjun A., Pei, Baikang, Schrörs, Barbara, Peters, Bjoern, Li, Bo, Stevenson, Brian J., Iseli, Christian, Morehouse, Christopher A., Melief, Cornelis J.M., Puig-Saus, Cristina, van Beek, Daphne, Balli, David, Gfeller, David, Haussler, David, Jäger, Dirk, Cortes, Eduardo, Esaulova, Ekaterina, Sherafat, Elham, Bartha, Gabor, Liu, Geng, Coukos, George, Xenarios, Ioannis, Mandoiu, Ion, Kooi, Irsan, Kessler, Jan H., Greenbaum, Jason A., Perera, Jason F., Harris, Jason, Hundal, Jasreet, Shelton, Jennifer M., Wang, Jianmin, Wang, Jiaqian, Szustakowski, Joseph, Kodysh, Julia, Forman, Juliet, Wei, Lei, Lee, Leo J., Slagter, Maarten, Mueller, Markus, Lower, Martin, Vormehr, Mathias, Artyomov, Maxim N., Yang, Naibo, Raicevic, Nevena M. Ilic, Guex, Nicolas, Robine, Nicolas, Halama, Niels, Skundric, Nikola M., Milicevic, Ognjen S., Gellert, Pascal, Jongeneel, Patrick, Charoentong, Pornpimol, Tanden, Prateek, Hu, Qiang, Gupta, Ravi, Petit, Robert, Ziman, Robert, Hilker, Rolf, Shukla, Sachet A., Boyle, Sean M., Qiu, Si, Salama, Sofie, Liu, Song, Wu, Song, Ketelaars, Steven L.C., Jhunjhunwala, Suchit, Shcheglova, Tatiana, Schuepbach, Thierry, Creasy, Todd H., Kovacevic, Vladimir B., Krebber, Willem-Jan, Sebastian, Yinong, Yalcin, Zeynep Kosaloglu, Selinsky, Cheryl, Ribas, Antoni, Hellmann, Matthew D., Hacohen, Nir, Sette, Alessandro, Heath, James R., Schreiber, Robert D., Kvistborg, Pia

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How Many New Genes Are There? von Lee, Leo J., Hughes, Timothy R., Frey, Brendan J., Carninci, Piero, Gough, Julian, Kasukawa, Takeya, Hayashizaki, Yoshihide

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Abstract 3383: EPIC: MHC-I epitope prediction integrating mass spectrometry derived motifs and tissue-specific expression profiles von Hu, Weipeng, Qiu, Si, Li, Youping, Liu, Geng, Zhang, Xiuqing, Lee, Leo J

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