Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery von Lee, Heewook, Kingsford, Carl

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Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing von Lee, Heewook, Popodi, Ellen, Tang, Haixu, Foster, Patricia L

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ATM-TCR: TCR-Epitope Binding Affinity Prediction Using a Multi-Head Self-Attention Model von Cai, Michael, Bang, Seojin, Zhang, Pengfei, Lee, Heewook

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Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing von Foster, Patricia L, Lee, Heewook, Popodi, Ellen, Townes, Jesse P, Tang, Haixu

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Antibiotic treatment enhances the genome-wide mutation rate of target cells von Long, Hongan, Miller, Samuel F., Strauss, Chloe, Zhao, Chaoxian, Cheng, Lei, Ye, Zhiqiang, Griffin, Katherine, Te, Ronald, Lee, Heewook, Chen, Chi-Chun, Lynch, Michael

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Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli von Bhagwat, Ashok S., Hao, Weilong, Townes, Jesse P., Lee, Heewook, Tang, Haixu, Foster, Patricia L.

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DNA Replication-Transcription Conflicts Do Not Significantly Contribute to Spontaneous Mutations Due to Replication Errors in Escherichia coli von Foster, Patricia L., Niccum, Brittany A., Lee, Heewook

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A highly annotated whole-genome sequence of a Korean individual von Seo, Jeong-Sun, Kim, Jong-Il, Ju, Young Seok, Park, Hansoo, Kim, Sheehyun, Lee, Seonwook, Yi, Jae-Hyuk, Mudge, Joann, Miller, Neil A, Hong, Dongwan, Bell, Callum J, Kim, Hye-Sun, Chung, In-Soon, Lee, Woo-Chung, Lee, Ji-Sun, Seo, Seung-Hyun, Yun, Ji-Young, Woo, Hyun Nyun, Lee, Heewook, Suh, Dongwhan, Lee, Seungbok, Kim, Hyun-Jin, Yavartanoo, Maryam, Kwak, Minhye, Zheng, Ying, Lee, Mi Kyeong, Park, Hyunjun, Kim, Jeong Yeon, Gokcumen, Omer, Mills, Ryan E, Zaranek, Alexander Wait, Thakuria, Joseph, Wu, Xiaodi, Kim, Ryan W, Huntley, Jim J, Luo, Shujun, Schroth, Gary P, Wu, Thomas D, Kim, HyeRan, Yang, Kap-Seok, Park, Woong-Yang, Kim, Hyungtae, Church, George M, Lee, Charles, Kingsmore, Stephen F

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The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes von Niccum, Brittany A, Lee, Heewook, MohammedIsmail, Wazim, Tang, Haixu, Foster, Patricia L

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Next-Generation Sequencing Technologies and Fragment Assembly Algorithms von Lee, Heewook, Tang, Haixu

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Detection of structural variants involving repetitive regions in the reference genome von Lee, Heewook, Popodi, Ellen, Foster, Patricia L, Tang, Haixu

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Accurate Assembly and Typing of HLA using a Graph-Guided Assembler Kourami von Lee, Heewook, Kingsford, Carl

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Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution von Kram, Karin E, Geiger, Christopher, Ismail, Wazim Mohammed, Lee, Heewook, Tang, Haixu, Foster, Patricia L, Finkel, Steven E

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HLA-PopSeq: High throughput, multiplexed six-locus Human Leukocyte Antigen typing for population-scale T cell immune profiling using rapid long-read nanopore sequencing von Kask, Oliver, Knappenberger, Mark, Lee, Heewook, Van Stone, Alicia, Anderson, Karen

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Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli von Lee, Heewook, Doak, Thomas G, Popodi, Ellen, Foster, Patricia L, Tang, Haixu

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Encrypted data-sharing for preserving privacy in wastewater-based epidemiology von Driver, Erin M., Ahsan, Manazir, Piske, Lucas, Lee, Heewook, Forrest, Stephanie, Halden, Rolf U., Trieu, Ni

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The Spectrum of Replication Errors in the Absence of Error Correction Assayed Across the Whole Genome of Escherichia coli von Niccum, Brittany A, Lee, Heewook, MohammedIsmail, Wazim, Tang, Haixu, Foster, Patricia L

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Determinants of Base-Pair Substitution Patterns Revealed by Whole-Genome Sequencing of DNA Mismatch Repair Defective Escherichia coli von Foster, Patricia L, Niccum, Brittany A, Popodi, Ellen, Townes, Jesse P, Lee, Heewook, MohammedIsmail, Wazim, Tang, Haixu

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Background Mutational Features of the Radiation-Resistant Bacterium Deinococcus radiodurans von Long, Hongan, Kucukyildirim, Sibel, Sung, Way, Williams, Emily, Lee, Heewook, Ackerman, Matthew, Doak, Thomas G, Tang, Haixu, Lynch, Michael

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Rates of Mutations and Transcript Errors in the Foodborne Pathogen Salmonella enterica subsp. enterica von Pan, Jiao, Li, Weiyi, Ni, Jiahao, Wu, Kun, Konigsberg, Iain, Rivera, Caitlyn E., Tincher, Clayton, Gregory, Colin, Zhou, Xia, Doak, Thomas G., Lee, Heewook, Wang, Yan, Gao, Xiang, Lynch, Michael, Long, Hongan

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